RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 PADI2Q9Y2J8 665 aa3.31□□□□□ -1.88
VPS41-207ENST00000439468 GREB1LQ9C091 1923 aaPredicted RBP3.31□□□□□ -1.88
VPS41-207ENST00000439468 SOS1Q07889 1333 aaPredicted RBP3.3□□□□□ -1.88
VPS41-207ENST00000439468 HYKKA2RU49 373 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 ANKRD66B4E2M5 251 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 LMX1BO60663 402 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 CTSVO60911 334 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 ACSL3O95573 720 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 LDLRP01130 860 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 FYNP06241 537 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 CCDC175P0C221 793 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 OR2T7P0C7T2 308 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 DANCRP0C864 163 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 MCCP23508 829 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 DGKAP23743 735 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 PTAFRP25105 342 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 AHRP35869 848 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 IL15P40933 162 aaPredicted RBP3.3□□□□□ -1.88
VPS41-207ENST00000439468 RAB28P51157 221 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 POLR2LP62875 67 aaKnown RBP3.3□□□□□ -1.88
VPS41-207ENST00000439468 HSPB3Q12988 150 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 PSMD6Q15008 389 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 DUOXA1Q1HG43 343 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 SIRPB2Q5JXA9 342 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 ARMC4Q5T2S8 1044 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 CST9LP1Q5W188 147 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 FAM109BQ6ICB4 259 aaPredicted RBP3.3□□□□□ -1.88
VPS41-207ENST00000439468 TRAT1Q6PIZ9 186 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 FAM198BQ6UWH4 519 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 PLEKHM3Q6ZWE6 761 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 LONP2Q86WA8 852 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 NAGSQ8N159 534 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 MUC20Q8N307 709 aaPredicted RBP3.3□□□□□ -1.88
VPS41-207ENST00000439468 ZNF843Q8N446 348 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 MAB21L3Q8N8X9 362 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 LMNTD1Q8N9Z9 388 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 L3MBTL4Q8NA19 623 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 KIF18AQ8NI77 898 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 HDAC11Q96DB2 347 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 MTERF3Q96E29 417 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 NUP85Q9BW27 656 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 EVA1AQ9H8M9 152 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 ERVMER34-1Q9H9K5 563 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 SH3GLB2Q9NR46 395 aa3.3□□□□□ -1.88
VPS41-207ENST00000439468 ERRFI1Q9UJM3 462 aaPredicted RBP3.3□□□□□ -1.88
VPS41-207ENST00000439468 SCN5AQ14524 2016 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 C16orf97H3BN30 126 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 BMPR1BO00238 502 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 BUD23O43709 281 aaKnown RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 XPNPEP2O43895 674 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 TSPAN1O60635 241 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 BAG4O95429 457 aaKnown RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 PLGP00747 810 aaPredicted RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 CSF2RAP15509 400 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 ERCC2P18074 760 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 TCEA1P23193 301 aaKnown RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 JAK1P23458 1154 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 EPHA2P29317 976 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 PCGF2P35227 344 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 PRKCIP41743 596 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 FMO5P49326 533 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 MAPK12P53778 367 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 EEF1A1P68104 462 aaKnown RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 ROR1Q01973 937 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 MZT1Q08AG7 82 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 ILF3Q12906 894 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS41-207ENST00000439468 HYAL4Q2M3T9 481 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 MDH1BQ5I0G3 518 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 EEF1A1P5Q5VTE0 462 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 KRT39Q6A163 491 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 GSG1LQ6UXU4 331 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 PPP1R21Q6ZMI0 780 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 C9orf139Q6ZV77 190 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 GALNTL5Q7Z4T8 443 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 KRT77Q7Z794 578 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 COMMD2Q86X83 199 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 FAM219AQ8IW50 185 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 KCNH5Q8NCM2 988 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 OR13A1Q8NGR1 328 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 OR13J1Q8NGT2 312 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 FGFBP3Q8TAT2 258 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 RNF128Q8TEB7 428 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 SLAMF9Q96A28 289 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 ALG14Q96F25 216 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 STAMBPL1Q96FJ0 436 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 OTUB1Q96FW1 271 aaPredicted RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 CFAP57Q96MR6 1250 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 C17orf77Q96MU5 243 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 SFXN2Q96NB2 322 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 ZNF583Q96ND8 569 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 PSD2Q9BQI7 771 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 LMF2Q9BU23 707 aaKnown RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 WNT5BQ9H1J7 359 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 S1PR5Q9H228 398 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 SLC38A7Q9NVC3 462 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 B3GAT1Q9P2W7 334 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 ANAPC5Q9UJX4 755 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 FAF1Q9UNN5 650 aaPredicted RBP3.29□□□□□ -1.88
VPS41-207ENST00000439468 LIPGQ9Y5X9 500 aa3.29□□□□□ -1.88
VPS41-207ENST00000439468 ERCC6L2Q5T890 1561 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms