RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 GPR33Q49SQ1 333 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 SYTL3Q4VX76 610 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 ZRANB3Q5FWF4 1079 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 FHL5Q5TD97 284 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 CPZQ66K79 652 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 CERS6Q6ZMG9 384 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 SYTL1Q8IYJ3 562 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 NXPE1Q8N323 547 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 ENDOVQ8N8Q3 282 aaKnown RBP7.54□□□□□ -1.2
VPS50-203ENST00000436177 GALNT11Q8NCW6 608 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 ACTL9Q8TC94 416 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 CPT1CQ8TCG5 803 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS50-203ENST00000436177 CALR3Q96L12 384 aaKnown RBP7.54□□□□□ -1.2
VPS50-203ENST00000436177 SPATA13Q96N96 652 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 LRFN5Q96NI6 719 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 TBL1YQ9BQ87 522 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 DPH2Q9BQC3 489 aaPredicted RBP7.54□□□□□ -1.2
VPS50-203ENST00000436177 HGH1Q9BTY7 390 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 TRIM55Q9BYV6 548 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 TRIM5Q9C035 493 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 MVB12BQ9H7P6 319 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 SLAMF7Q9NQ25 335 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 GPN3Q9UHW5 284 aaPredicted RBP7.54□□□□□ -1.2
VPS50-203ENST00000436177 FEZ2Q9UHY8 353 aaPredicted RBP7.54□□□□□ -1.2
VPS50-203ENST00000436177 BTRCQ9Y297 605 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 PCDHGA9Q9Y5G4 932 aaKnown RBP7.54□□□□□ -1.2
VPS50-203ENST00000436177 CENPEQ02224 2701 aa7.54□□□□□ -1.2
VPS50-203ENST00000436177 BLACEA4D250 179 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 E7EQ34 232 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 K7EM74 188 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 QSOX1O00391 747 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 PEX12O00623 359 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 GAPDHSO14556 408 aaPredicted RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 DDX3YO15523 660 aaKnown RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 KLHL41O60662 606 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 TMEM63AO94886 807 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 IGHEP01854 428 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 GSTM1P09488 218 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 RAB40ALP0C0E4 278 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 ATP1B2P14415 290 aaPredicted RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 MC4RP32245 332 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 PTGIRP43119 386 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 LMAN1P49257 510 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 VAV2P52735 878 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 ZNF140P52738 457 aaPredicted RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 RWDD2BP57060 319 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 OTUD4Q01804 1114 aaKnown RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 GSTM4Q03013 218 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 RPA4Q13156 261 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 NCF4Q15080 339 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 P3H1Q32P28 736 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 PTCHD3Q3KNS1 767 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 ANKRD20A2Q5SQ80 823 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 ANKRD20A1Q5TYW2 823 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 ANKRD20A3Q5VUR7 823 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 IZUMO3Q5VZ72 239 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 FBXO38Q6PIJ6 1188 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 SNX20Q7Z614 316 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 AMIGO1Q86WK6 493 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 HPS6Q86YV9 775 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 CCDC170Q8IYT3 715 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 TMEM102Q8N9M5 508 aaPredicted RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 CLEC1AQ8NC01 280 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 OR13C4Q8NGS5 318 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 NAT14Q8WUY8 206 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 KRT35Q92764 455 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 ZNF501Q96CX3 271 aaPredicted RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 SGSM3Q96HU1 749 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 LINC00615Q96LM1 132 aaPredicted RBP7.53□□□□□ -1.2
VPS50-203ENST00000436177 IP6K3Q96PC2 410 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 RUFY1Q96T51 708 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 TTC1Q99614 292 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 NLNQ9BYT8 704 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 OSBPL8Q9BZF1 889 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 FAM96AQ9H5X1 160 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 C10orf88Q9H8K7 445 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 COG4Q9H9E3 785 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 ZDHHC3Q9NYG2 299 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 GPR83Q9NYM4 423 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 TCFL5Q9UL49 500 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 PCDHGB7Q9Y5F8 929 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 PCDHA13Q9Y5I0 950 aa7.53□□□□□ -1.2
VPS50-203ENST00000436177 C17orf113A0A1B0GUU1 675 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 CCDC78A2IDD5 438 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 A6NL46 340 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 CYSRT1A8MQ03 144 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 BTN3A1O00481 513 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 CCL22O00626 93 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 ZNF185O15231 689 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 OR2B3O76000 313 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 FTH1P02794 183 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 PDGFAP04085 211 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 CD63P08962 238 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 GNLYP22749 145 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 ACRV1P26436 265 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 PRDX3P30048 256 aaKnown RBP7.52□□□□□ -1.21
VPS50-203ENST00000436177 OTX2P32243 289 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 SHMT2P34897 504 aa7.52□□□□□ -1.21
VPS50-203ENST00000436177 CTNNA1P35221 906 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms