RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 UBXN4Q92575 508 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 SH3KBP1Q96B97 665 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 CXorf40BQ96DE9 158 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 CYTH2Q99418 400 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 MENTQ9BUN1 341 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 TBC1D10AQ9BXI6 508 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 LRRN3Q9H3W5 708 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 MVB12BQ9H7P6 319 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 IMP3Q9NV31 184 aaKnown RBP12.1□□□□□ -0.47
USP40-205ENST00000430158 EVA1BQ9NVM1 165 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 NFS1Q9Y697 457 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 ACACAQ13085 2346 aa12.1□□□□□ -0.47
USP40-205ENST00000430158 IGF2RP11717 2491 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 FAM95CA0A1B0GW59 222 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 FAM221BA6H8Z2 402 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 EIF3FO00303 357 aaPredicted RBP12.09□□□□□ -0.47
USP40-205ENST00000430158 VPS26AO75436 327 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 CSF2RBP32927 897 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 PHBP35232 272 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 SKIV2L2P42285 1042 aaKnown RBP12.09□□□□□ -0.47
USP40-205ENST00000430158 ILF2Q12905 390 aaKnown RBP12.09□□□□□ -0.47
USP40-205ENST00000430158 ABRQ12979 859 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 TMED2Q15363 201 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 ZKSCAN8Q15776 578 aaPredicted RBP12.09□□□□□ -0.47
USP40-205ENST00000430158 SYTL3Q4VX76 610 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 GRTP1Q5TC63 336 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 UNC5DQ6UXZ4 953 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 DGLUCYQ7Z3D6 616 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 CTAGE3PQ8IX95 158 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 DCBLD1Q8N8Z6 715 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 GPATCH11Q8N954 259 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 Q8N9G6 341 aaPredicted RBP12.09□□□□□ -0.47
USP40-205ENST00000430158 OR5K2Q8NHB8 316 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 ASB11Q8WXH4 323 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 CDKL2Q92772 493 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 DLG3Q92796 817 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 PDLIM5Q96HC4 596 aaKnown RBP12.09□□□□□ -0.47
USP40-205ENST00000430158 CCDC68Q9H2F9 335 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 TAS2R13Q9NYV9 303 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 PDP2Q9P2J9 529 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 RUVBL2Q9Y230 463 aaKnown RBP12.09□□□□□ -0.47
USP40-205ENST00000430158 HEBP2Q9Y5Z4 205 aa12.09□□□□□ -0.47
USP40-205ENST00000430158 ACACBO00763 2458 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 A0A087WUV0 522 aaPredicted RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 E5RI56 91 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 GFYI3L273 518 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 IFRD1O00458 451 aaPredicted RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 PSIP1O75475 530 aaKnown RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 C1orf105O95561 183 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 TOP3BO95985 862 aaKnown RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 RPLP0P05388 317 aaKnown RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 MPC1LP0DKB6 136 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 CBSLP0DN79 551 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 ENO3P13929 434 aaPredicted RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 MCM3P25205 808 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 NDUFS1P28331 727 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 ALDH4A1P30038 563 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 CBSP35520 551 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 POU4F1Q01851 419 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 ZFP36L1Q07352 338 aaKnown RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 SLC29A2Q14542 456 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 CLPPQ16740 277 aaPredicted RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 KLHL38Q2WGJ6 581 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 CCSMST1Q4G0I0 132 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 NKAIN2Q5VXU1 208 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 TMPRSS7Q7RTY8 843 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 PIWIL4Q7Z3Z4 852 aaKnown RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 SLITRK4Q8IW52 837 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 TRIM48Q8IWZ4 208 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 CPNE9Q8IYJ1 553 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 TBC1D21Q8IYX1 336 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 CHCHD4Q8N4Q1 142 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 UHMK1Q8TAS1 419 aaKnown RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 DCAKDQ8WVC6 231 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 EEF1AKMT1Q8WVE0 214 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 JPH3Q8WXH2 748 aaPredicted RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 CAVIN3Q969G5 261 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 ATXN7L3BQ96GX2 97 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 ELMO2Q96JJ3 720 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 FERD3LQ96RJ6 166 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 SLC38A3Q99624 504 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 NUDT22Q9BRQ3 303 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 TFB2MQ9H5Q4 396 aaKnown RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 POPDC3Q9HBV1 291 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 KCNK4Q9NYG8 393 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 IKZF3Q9UKT9 509 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 ATXN7L1Q9ULK2 861 aaPredicted RBP12.08□□□□□ -0.48
USP40-205ENST00000430158 COLEC10Q9Y6Z7 277 aa12.08□□□□□ -0.48
USP40-205ENST00000430158 A0A1W2PNU3 283 aaPredicted RBP12.07□□□□□ -0.48
USP40-205ENST00000430158 ARHGEF33A8MVX0 844 aa12.07□□□□□ -0.48
USP40-205ENST00000430158 D6RAR5 112 aa12.07□□□□□ -0.48
USP40-205ENST00000430158 TCEA3O75764 348 aa12.07□□□□□ -0.48
USP40-205ENST00000430158 MT-CO3P00414 261 aa12.07□□□□□ -0.48
USP40-205ENST00000430158 ITGA2BP08514 1039 aa12.07□□□□□ -0.48
USP40-205ENST00000430158 ZNF37AP17032 561 aaPredicted RBP12.07□□□□□ -0.48
USP40-205ENST00000430158 SPRP35270 261 aaPredicted RBP12.07□□□□□ -0.48
USP40-205ENST00000430158 MAGEA12P43365 314 aa12.07□□□□□ -0.48
USP40-205ENST00000430158 GPLD1P80108 840 aa12.07□□□□□ -0.48
USP40-205ENST00000430158 PRKG2Q13237 762 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms