RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ZRANB2O95218 330 aaKnown RBP eCLIP7.83□□□□□ -1.16
VIM-202ENST00000421459 DDAH2O95865 285 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 UMODP07911 640 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 UGT2B7P16662 529 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 NDUFS1P28331 727 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 MC4RP32245 332 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 SLC1A1P43005 524 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 GABRA4P48169 554 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 ZNF140P52738 457 aaPredicted RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 GEMP55040 296 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 HIF1AQ16665 826 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 ZRANB3Q5FWF4 1079 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 TFDP3Q5H9I0 405 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 VWA5B1Q5TIE3 1220 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 AADACL2Q6P093 401 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 SPESP1Q6UW49 350 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 UNC5AQ6ZN44 842 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 BZW1Q7L1Q6 419 aaKnown RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 PPP1R32Q7Z5V6 425 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 SERPINA9Q86WD7 417 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 SRRM1Q8IYB3 904 aaKnown RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 PIANPQ8IYJ0 282 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 GALNT16Q8N428 558 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 DTWD1Q8N5C7 304 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 C2orf73Q8N5S3 287 aaPredicted RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 ZNF655Q8N720 491 aaPredicted RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 FLVCR1-AS1Q8TAF5 88 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 CCDC110Q8TBZ0 833 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 TFGQ92734 400 aaPredicted RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 IQCDQ96DY2 449 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 DNAJC1Q96KC8 554 aaKnown RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 CCDC42Q96M95 316 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 OR2A14Q96R47 310 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 COPS8Q99627 209 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 MESP1Q9BRJ9 268 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 SLC29A3Q9BZD2 475 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 TFB2MQ9H5Q4 396 aaKnown RBP7.83□□□□□ -1.16
VIM-202ENST00000421459 SLC22A11Q9NSA0 550 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 P4HTMQ9NXG6 502 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 TRHDEQ9UKU6 1024 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 B3GNT3Q9Y2A9 372 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 ICE1Q9Y2F5 2266 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 ITPR2Q14571 2701 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 C17orf113A0A1B0GUU1 675 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 C5orf60A6NFR6 353 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 OR51F1A6NGY5 319 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 C2orf74A8MZ97 194 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 C9J4A7 227 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 IFRD1O00458 451 aaPredicted RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 PSTPIP1O43586 416 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 MFAP3LO75121 409 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 OR2B3O76000 313 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 PRF1P14222 555 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 ITGAXP20702 1163 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 AGXTP21549 392 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 PEBP1P30086 187 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 RRADP55042 308 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 OTUD4Q01804 1114 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 SRSF11Q05519 484 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 BOP1Q14137 746 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 SSPNQ14714 243 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 DCAF10Q5QP82 559 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 ANKRD20A2Q5SQ80 823 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 ANKRD20A1Q5TYW2 823 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 ANKRD20A3Q5VUR7 823 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 C1QL3Q5VWW1 255 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 SHISA6Q6ZSJ9 500 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 TAS2R42Q7RTR8 314 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 SNX20Q7Z614 316 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 RAB43Q86YS6 212 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 KATNAL2Q8IYT4 538 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 RCOR2Q8IZ40 523 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 IQCKQ8N0W5 287 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 CARFQ8N187 725 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 TAB3Q8N5C8 712 aaPredicted RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 AMER2Q8N7J2 671 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 C19orf47Q8N9M1 422 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 C5orf34Q96MH7 638 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 GBP5Q96PP8 586 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 VAT1Q99536 393 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 ILKAPQ9H0C8 392 aaPredicted RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 ZNHIT6Q9NWK9 470 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 ZDHHC3Q9NYG2 299 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 IFT80Q9P2H3 777 aaPredicted RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 GPN3Q9UHW5 284 aaPredicted RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 G3BP2Q9UN86 482 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 SLC5A6Q9Y289 635 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 TDRKHQ9Y2W6 561 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 SHANK1Q9Y566 2161 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 HEBP2Q9Y5Z4 205 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 COPG1Q9Y678 874 aaKnown RBP7.82□□□□□ -1.16
VIM-202ENST00000421459 CSMD2Q7Z408 3487 aa7.82□□□□□ -1.16
VIM-202ENST00000421459 NOTCH2Q04721 2471 aa7.81□□□□□ -1.16
VIM-202ENST00000421459 MED13Q9UHV7 2174 aa7.81□□□□□ -1.16
VIM-202ENST00000421459 IGLV3-16A0A075B6K0 115 aa7.81□□□□□ -1.16
VIM-202ENST00000421459 MACROD2A1Z1Q3 448 aa7.81□□□□□ -1.16
VIM-202ENST00000421459 HACD1B0YJ81 288 aa7.81□□□□□ -1.16
VIM-202ENST00000421459 BHMG1C9JSJ3 638 aaPredicted RBP7.81□□□□□ -1.16
VIM-202ENST00000421459 KCNN4O15554 427 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms