RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PGAM4Q8N0Y7 254 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 GMCL1P1Q8NEA9 526 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 H6PDO95479 791 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CD79BP40259 229 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CDK3Q00526 305 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 SEC23BQ15437 767 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 FAM151BQ6UXP7 276 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 METTL25Q8N6Q8 603 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 PHC3Q8NDX5 983 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 PNPLA2Q96AD5 504 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CMAHPQ9Y471 501 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 KERAO60938 352 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CYP3A4P08684 503 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CD36P16671 472 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 HOXB9P17482 250 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 GSTM2P28161 218 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 RAB5CP51148 216 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 C16orf86Q6ZW13 317 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 KIF18BQ86Y91 864 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ZMIZ2Q8NF64 920 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 BRF2Q9HAW0 419 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 TAS2R10Q9NYW0 307 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 HTR3EA5X5Y0 456 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CLDN9O95484 217 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ERVK-9P63128 1117 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 RIN1Q13671 783 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ROPN1LQ96C74 230 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 GFOD1Q9NXC2 390 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 A0A1B0GVM2 712 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 TCAF2A6NFQ2 919 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 MEN1O00255 615 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 GKN3PP0CG01 181 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ZBTB48P10074 688 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 GMPSP49915 693 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 C9orf43Q8TAL5 461 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ELP5Q8TE02 316 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 AGAP2Q99490 1192 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 TNFRSF10BO14763 440 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 GNAZP19086 355 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ATP5C1P36542 298 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 HTD2P86397 168 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 WACQ9BTA9 647 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 SAMD9Q5K651 1589 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ELOA3DA6NLF2 546 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 GLRA2P23416 452 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ATP5A1P25705 553 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 TSGA10IPQ3SY00 556 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ELOA3BQ3SY89 546 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 DUPD1Q68J44 220 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 REP15Q6BDI9 236 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ELOA3Q8NG57 546 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 PIWIL1Q96J94 861 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 MAP3K14Q99558 947 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CDH10Q9Y6N8 788 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ICAM1P05362 532 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 MIPP30301 263 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ICAM3P32942 547 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 EEF1A2Q05639 463 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ALLCQ8N6M5 410 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 EBNA1BP2Q99848 306 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 IMP3Q9NV31 184 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CASC3O15234 703 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 VARSP26640 1264 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC2A14Q8TDB8 520 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 EXOSC8Q96B26 276 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 A8MXE2 369 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CXCL8P10145 99 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 MSX2P35548 267 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CASRP41180 1078 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 GAL3ST4Q96RP7 486 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CCDC106Q9BWC9 280 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 TMEM100Q9NV29 134 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ATF5Q9Y2D1 282 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 H0YGN5 161 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 AMHP03971 560 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 KCTD19Q17RG1 926 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 FAM129CQ86XR2 697 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF619Q8N2I2 560 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ATAD1Q8NBU5 361 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 LRRC58Q96CX6 371 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CD320Q9NPF0 282 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 RARAP10276 462 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 HSPB3Q12988 150 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 EML3Q32P44 896 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC22A16Q86VW1 577 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 SUN3Q8TAQ9 357 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 PCYOX1Q9UHG3 505 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 FGF1P05230 155 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 KELP23276 732 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 RPS3P23396 243 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CDK2P24941 298 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 TAS2R50P59544 299 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 CES5AQ6NT32 575 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 NCSTNQ92542 709 aa13.12□□□□□ -0.31
CCDC88A-204ENST00000413716 ATP6AP2O75787 350 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 PRKACAP17612 351 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 KDELR1P24390 212 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 RXRBP28702 533 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 TAS2R39P59534 338 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SAMD10Q9BYL1 202 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms