RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 LHPPQ9H008 270 aa9.65□□□□□ -0.86
MSH2-202ENST00000406134 KAT8Q9H7Z6 458 aaKnown RBP9.65□□□□□ -0.86
MSH2-202ENST00000406134 POLR1BQ9H9Y6 1135 aa9.65□□□□□ -0.86
MSH2-202ENST00000406134 RIC8BQ9NVN3 520 aa9.65□□□□□ -0.86
MSH2-202ENST00000406134 THEGQ9P2T0 379 aa9.65□□□□□ -0.86
MSH2-202ENST00000406134 ZMYM5Q9UJ78 669 aa9.65□□□□□ -0.86
MSH2-202ENST00000406134 DLGAP4Q9Y2H0 992 aa9.65□□□□□ -0.86
MSH2-202ENST00000406134 CORINQ9Y5Q5 1042 aa9.65□□□□□ -0.86
MSH2-202ENST00000406134 hCG_2014768A0A024R1R8 64 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 PRMT5O14744 637 aaPredicted RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 ALDH2P05091 517 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 CD6P30203 668 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 MTHFRP42898 656 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 RPL38P63173 70 aaKnown RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 GBX1Q14549 363 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 NR6A1Q15406 480 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 FAM174BQ3ZCQ3 159 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 OTUD3Q5T2D3 398 aaPredicted RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 SULT1C3Q6IMI6 304 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ANKS3Q6ZW76 656 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 NECAB2Q7Z6G3 386 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 TSPAN33Q86UF1 283 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 OR10A6Q8NH74 314 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 OSCP1Q8WVF1 389 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 LMLNQ96KR4 655 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 NSMCE2Q96MF7 247 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 CPPED1Q9BRF8 314 aaPredicted RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 NTMT1Q9BV86 223 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 FAM118AQ9NWS6 357 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 VPS9D1Q9Y2B5 631 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 FFAR3O14843 346 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 GPR42O15529 346 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 CLDN7O95471 211 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 GUCA1CO95843 209 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ANXA6P08133 673 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 PFKLP17858 780 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 AGXTP21549 392 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 UGT1A1P22309 533 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 UGT1A4P22310 534 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 UGT1A3P35503 534 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 UGT1A5P35504 534 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 HNF1BP35680 557 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ZNF177Q13360 481 aaPredicted RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 GPR149Q86SP6 731 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 RGL4Q8IZJ4 473 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ARL10Q8N8L6 244 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ZNF334Q9HCZ1 680 aaPredicted RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 HPS4Q9NQG7 708 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 LATS2Q9NRM7 1088 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 USE1Q9NZ43 259 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 PCDHB14Q9Y5E9 798 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 PCM1Q15154 2024 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 SH3PXD2BA1X283 911 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 DYTNA2CJ06 578 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 HPRP00739 348 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 TFPTP0C1Z6 253 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 OR1D2P34982 312 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 CYP4F3Q08477 520 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 NFATC3Q12968 1075 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 PPP1R8Q12972 351 aaKnown RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 LRIF1Q5T3J3 769 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ZNF783Q6ZMS7 281 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 RFLNAQ6ZTI6 216 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 TAS2R42Q7RTR8 314 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 ADAMTSL2Q86TH1 951 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 SPARTQ8N0X7 666 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 LIX1Q8N485 282 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 CARNMT1Q8N4J0 409 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 MYO19Q96H55 970 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 CDK5RAP1Q96SZ6 601 aaKnown RBP9.64□□□□□ -0.87
MSH2-202ENST00000406134 TUBA1CQ9BQE3 449 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 INPP5KQ9BT40 448 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 BTBD2Q9BX70 525 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 PCDHB1Q9Y5F3 818 aa9.64□□□□□ -0.87
MSH2-202ENST00000406134 E5RI56 91 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 NOBOXO60393 691 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 OLFM2O95897 454 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 CHEK2O96017 543 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 TRBC1P01850 177 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 MSH3P20585 1137 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 TPP2P29144 1249 aaPredicted RBP9.63□□□□□ -0.87
MSH2-202ENST00000406134 ISL1P61371 349 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 KCNC4Q03721 635 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 PIGFQ07326 219 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 PON2Q15165 354 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 MACC1Q6ZN28 852 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 R3HCC1LQ7Z5L2 792 aaKnown RBP9.63□□□□□ -0.87
MSH2-202ENST00000406134 NPAS4Q8IUM7 802 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 ZC3H7AQ8IWR0 971 aaKnown RBP9.63□□□□□ -0.87
MSH2-202ENST00000406134 FAM126BQ8IXS8 530 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 ITFG1Q8TB96 612 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 NETO1Q8TDF5 533 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 AURKBQ96GD4 344 aaPredicted RBP9.63□□□□□ -0.87
MSH2-202ENST00000406134 TRMT2BQ96GJ1 504 aaKnown RBP9.63□□□□□ -0.87
MSH2-202ENST00000406134 CEP295NLQ96MC4 621 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 TMEM175Q9BSA9 504 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 YTHDF1Q9BYJ9 559 aaKnown RBP9.63□□□□□ -0.87
MSH2-202ENST00000406134 FANCEQ9HB96 536 aa9.63□□□□□ -0.87
MSH2-202ENST00000406134 DCAF13Q9NV06 445 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms