RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TGM7Q96PF1 710 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 HGH1Q9BTY7 390 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 SAYSD1Q9NPB0 183 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 PPANQ9NQ55 473 aaKnown RBP21.12■□□□□ 0.97
CLN3-207ENST00000395653 THSD1Q9NS62 852 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 KLHL3Q9UH77 587 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 KIF26BQ2KJY2 2108 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 RPN2P04844 631 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 ATP5DP30049 168 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 PRKG2Q13237 762 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 GLE1Q53GS7 698 aaKnown RBP21.12■□□□□ 0.97
CLN3-207ENST00000395653 IRGCQ6NXR0 463 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 ZNF549Q6P9A3 640 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 CNSTQ6PJW8 725 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 PRSS42Q7Z5A4 293 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 ZBTB2Q8N680 514 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 PYROXD1Q8WU10 500 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 LCN9Q8WX39 176 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 SRMSQ9H3Y6 488 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 HRASLS2Q9NWW9 162 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 MOCS1Q9NZB8 636 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 KLHL42Q9P2K6 505 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 PISDQ9UG56 409 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 MED16Q9Y2X0 877 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 ESYT3A0FGR9 886 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 OR6C74A6NCV1 312 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 A8MU76 341 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 CDRT15L2A8MXV6 281 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 MATN2O00339 956 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 KDM1AO60341 852 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 CLCN7P51798 805 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 MGAT5Q09328 741 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 CLEC14AQ86T13 490 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 OR4E2Q8NGC2 313 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 CD180Q99467 661 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 AARSD1Q9BTE6 412 aaKnown RBP21.11■□□□□ 0.97
CLN3-207ENST00000395653 GALPQ9UBC7 116 aa21.11■□□□□ 0.97
CLN3-207ENST00000395653 AGRPO00253 132 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 ITIH1P19827 911 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 GABRB3P28472 473 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 GUCY2DQ02846 1103 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 ABRQ12979 859 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 PRKAA1Q13131 559 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 TTLL9Q3SXZ7 439 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 ARMC6Q6NXE6 501 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 AMIGO1Q86WK6 493 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 SNIP1Q8TAD8 396 aaKnown RBP21.1■□□□□ 0.97
CLN3-207ENST00000395653 FGF11Q92914 225 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 FAM136AQ96C01 138 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 ZNF768Q9H5H4 540 aaKnown RBP21.1■□□□□ 0.97
CLN3-207ENST00000395653 ZDHHC18Q9NUE0 388 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 ZFATQ9P243 1243 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 SEMA5BQ9P283 1151 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 ZMIZ1Q9ULJ6 1067 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 PCDHGA7Q9Y5G6 932 aa21.1■□□□□ 0.97
CLN3-207ENST00000395653 APC2O95996 2303 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 EPG5Q9HCE0 2579 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 USP24Q9UPU5 2620 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 B4E171 279 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 TAF4O00268 1085 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 RASSF9O75901 435 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 AHSGP02765 367 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 CCL4P13236 92 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 SHMT2P34897 504 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 TSPAN7P41732 249 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 PPP1CAP62136 330 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 ST3GAL2Q16842 350 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 FAM92BQ6ZTR7 304 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 DCUN1D3Q8IWE4 304 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 PALM2Q8IXS6 379 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 FOPNLQ96NB1 174 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 FAM129AQ9BZQ8 928 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 B3GNT4Q9C0J1 378 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 FAM114A2Q9NRY5 505 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 SLC17A6Q9P2U8 582 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 DMGDHQ9UI17 866 aaKnown RBP21.09■□□□□ 0.97
CLN3-207ENST00000395653 CORO1CQ9ULV4 474 aaPredicted RBP21.09■□□□□ 0.97
CLN3-207ENST00000395653 ICKQ9UPZ9 632 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 TDRKHQ9Y2W6 561 aaKnown RBP21.09■□□□□ 0.97
CLN3-207ENST00000395653 DHRS7Q9Y394 339 aa21.09■□□□□ 0.97
CLN3-207ENST00000395653 KIF1CO43896 1103 aaKnown RBP21.08■□□□□ 0.97
CLN3-207ENST00000395653 VPS26AO75436 327 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 GSTA2P09210 222 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 FGF3P11487 239 aaPredicted RBP21.08■□□□□ 0.97
CLN3-207ENST00000395653 POLR2CP19387 275 aaPredicted RBP21.08■□□□□ 0.97
CLN3-207ENST00000395653 ETV5P41161 510 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 MAPK10P53779 464 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 DNTTIP2Q5QJE6 756 aaKnown RBP21.08■□□□□ 0.97
CLN3-207ENST00000395653 CACHD1Q5VU97 1274 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 CARFQ8N187 725 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 BMPERQ8N8U9 685 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 CFAP61Q8NHU2 1237 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 GIMAP7Q8NHV1 300 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 SKA2Q8WVK7 121 aaPredicted RBP21.08■□□□□ 0.97
CLN3-207ENST00000395653 UBXN4Q92575 508 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 OCIAD1Q9NX40 245 aa21.08■□□□□ 0.97
CLN3-207ENST00000395653 DMXL2Q8TDJ6 3036 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 ANKRD11Q6UB99 2663 aaPredicted RBP21.07■□□□□ 0.96
CLN3-207ENST00000395653 TLCD2A6NGC4 264 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 BTN3A3O00478 584 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms