RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ELOA3DA6NLF2 546 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 AKAP8O43823 692 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ITGA10O75578 1167 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 GJB1P08034 283 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 IL10RBQ08334 325 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ELOA3BQ3SY89 546 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 FSTL5Q8N475 847 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ELOA3Q8NG57 546 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CAMK1GQ96NX5 476 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 GFM1Q96RP9 751 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 B3GNT5Q9BYG0 378 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ELAC1Q9H777 363 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 PMF1-BGLAPU3KQ54 211 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ARL3P36405 182 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 GALK1P51570 392 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 DUSP28Q4G0W2 176 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 PRAMEF17Q5VTA0 474 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 C15orf52Q6ZUT6 534 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ZDHHC21Q8IVQ6 265 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 KLHL36Q8N4N3 616 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 SNIP1Q8TAD8 396 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 C15orf40Q8WUR7 153 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 MARCH7Q9H992 704 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CHRAC1Q9NRG0 131 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM237AA0A1B0GTK4 181 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 OR2AT4A6NND4 320 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM155BO75949 473 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 MMP8P22894 467 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 MAGEA2P43356 314 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CCR8P51685 355 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 C1QTNF8P60827 252 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CRTC2Q53ET0 693 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 DNM1P34Q6PK57 102 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ADGRD1Q6QNK2 874 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF627Q7L945 461 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ECHDC2Q86YB7 292 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CPNE9Q8IYJ1 553 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 GPR151Q8TDV0 419 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC22A18Q96BI1 424 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 PURBQ96QR8 312 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC6A15Q9H2J7 730 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 MOV10Q9HCE1 1003 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 PCDHGC3Q9UN70 934 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 PCDHGA10Q9Y5H3 936 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 FABP12A6NFH5 140 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 TTC34A8MYJ7 566 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 TPST2O60704 377 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 MAGP20916 626 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 NCBP2P52298 156 aaKnown RBP eCLIP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CRISP3P54108 245 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ECT2LQ008S8 904 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 LINGO4Q6UY18 593 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 LRRC69Q6ZNQ3 347 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 OXR1Q8N573 874 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 SIDT2Q8NBJ9 832 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ACBD6Q9BR61 282 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 GDAP2Q9NXN4 497 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 KANTRA0A1W2PQU2 76 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC22A2O15244 555 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CPNE3O75131 537 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 ESR1P03372 595 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 MTHFD1P11586 935 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 SGCBQ16585 318 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CLNKQ7Z7G1 428 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CAND1Q86VP6 1230 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 NETO2Q8NC67 525 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CNDP2Q96KP4 475 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 PTPN18Q99952 460 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 RPL36Q9Y3U8 105 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 DIP2CQ9Y2E4 1556 aa12.59□□□□□ -0.39
CCDC88C-204ENST00000389857 CAPN8A6NHC0 703 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 CCDC85CA6NKD9 419 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 DUXAA6NLW8 204 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 hCG_2039718K7EN88 272 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 PI15O43692 258 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 MXD1Q05195 221 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 CA9Q16790 459 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 MFSD5Q6N075 450 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 CHADLQ6NUI6 762 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 CLIP4Q8N3C7 705 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 NATD1Q8N6N6 113 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 C1orf109Q9NX04 203 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 LYARQ9NX58 379 aaKnown RBP12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 GTF2IRD1Q9UHL9 959 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 PCDHGB2Q9Y5G2 931 aa12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 AFDNP55196 1824 aaKnown RBP12.58□□□□□ -0.39
CCDC88C-204ENST00000389857 TARDBPQ13148 414 aaKnown RBP eCLIP12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 HSDL1Q3SXM5 330 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 PTPN20Q4JDL3 420 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 TSTD2Q5T7W7 516 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 RFWD3Q6PCD5 774 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 OR10A6Q8NH74 314 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 NAT14Q8WUY8 206 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 SMPDL3BQ92485 455 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 B3GNT4Q9C0J1 378 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 ANKRA2Q9H9E1 313 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 ACSL1P33121 698 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 GRK5P34947 590 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 MON1BQ7L1V2 547 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 PLD5Q8N7P1 536 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms