RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RAP1GDS1P52306 607 aa10□□□□□ -0.81
VPS53-202ENST00000389040 SRP54P61011 504 aaKnown RBP10□□□□□ -0.81
VPS53-202ENST00000389040 MXRA7P84157 204 aa10□□□□□ -0.81
VPS53-202ENST00000389040 XIAPP98170 497 aa10□□□□□ -0.81
VPS53-202ENST00000389040 GSTM4Q03013 218 aa10□□□□□ -0.81
VPS53-202ENST00000389040 CACNG1Q06432 222 aa10□□□□□ -0.81
VPS53-202ENST00000389040 LRP8Q14114 963 aa10□□□□□ -0.81
VPS53-202ENST00000389040 SEMA3AQ14563 771 aa10□□□□□ -0.81
VPS53-202ENST00000389040 INAVAQ3KP66 663 aa10□□□□□ -0.81
VPS53-202ENST00000389040 AASDHQ4L235 1098 aaPredicted RBP10□□□□□ -0.81
VPS53-202ENST00000389040 AFTPHQ6ULP2 937 aa10□□□□□ -0.81
VPS53-202ENST00000389040 SDCCAG8Q86SQ7 713 aaPredicted RBP10□□□□□ -0.81
VPS53-202ENST00000389040 PIM3Q86V86 326 aa10□□□□□ -0.81
VPS53-202ENST00000389040 ENDOVQ8N8Q3 282 aaKnown RBP10□□□□□ -0.81
VPS53-202ENST00000389040 CMTM5Q96DZ9 223 aa10□□□□□ -0.81
VPS53-202ENST00000389040 OR52B2Q96RD2 323 aa10□□□□□ -0.81
VPS53-202ENST00000389040 MYOCQ99972 504 aa10□□□□□ -0.81
VPS53-202ENST00000389040 GAREM1Q9H706 876 aa10□□□□□ -0.81
VPS53-202ENST00000389040 BPIFA1Q9NP55 256 aa10□□□□□ -0.81
VPS53-202ENST00000389040 TRNAU1APQ9NX07 287 aaKnown RBP10□□□□□ -0.81
VPS53-202ENST00000389040 NKX1-2Q9UD57 310 aaPredicted RBP10□□□□□ -0.81
VPS53-202ENST00000389040 KLQ9UEF7 1012 aa10□□□□□ -0.81
VPS53-202ENST00000389040 RAPGEFL1Q9UHV5 662 aa10□□□□□ -0.81
VPS53-202ENST00000389040 CD84Q9UIB8 345 aa10□□□□□ -0.81
VPS53-202ENST00000389040 CNOT6Q9ULM6 557 aaKnown RBP10□□□□□ -0.81
VPS53-202ENST00000389040 GPR34Q9UPC5 381 aa10□□□□□ -0.81
VPS53-202ENST00000389040 EPB41L3Q9Y2J2 1087 aaPredicted RBP10□□□□□ -0.81
VPS53-202ENST00000389040 DNMT3AQ9Y6K1 912 aaPredicted RBP10□□□□□ -0.81
VPS53-202ENST00000389040 MYO15AQ9UKN7 3530 aa10□□□□□ -0.81
VPS53-202ENST00000389040 TRBV5-4A0A0C4DH59 114 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 A0A0U1RQS6 177 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 A8MT66 165 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 FADS2P1A8MWK0 482 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CFAP99D6REC4 459 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 QSOX1O00391 747 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 GRID2O43424 1007 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 IPO13O94829 963 aaKnown RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 ANP32DO95626 131 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 TNFP01375 233 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 SLC4A1P02730 911 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 PMLP29590 882 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 HK3P52790 923 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 BNC1Q01954 994 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 ELOCQ15369 112 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CHRNA6Q15825 494 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 TYSND1Q2T9J0 566 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 ATP13A5Q4VNC0 1218 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 ZNF549Q6P9A3 640 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 TMEM207Q6UWW9 146 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 RFLNAQ6ZTI6 216 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 SPNS2Q8IVW8 549 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 MINDY1Q8N5J2 469 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 NETO1Q8TDF5 533 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CNDP1Q96KN2 507 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 TCF12Q99081 682 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 SHCBP1LQ9BZQ2 653 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 ASB8Q9H765 288 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 POPDC3Q9HBV1 291 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 PARD6AQ9NPB6 346 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 INTS10Q9NVR2 710 aaKnown RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 SPASTQ9UBP0 616 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CDYLQ9Y232 598 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 VPS9D1Q9Y2B5 631 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CA5BQ9Y2D0 317 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 THADAQ6YHU6 1953 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 NUMA1Q14980 2115 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 GOLGA8QA0A0J9YX86 632 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 GOLGA8OA6NCC3 632 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 GOLGA8NF8WBI6 632 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 GAPDHSO14556 408 aaPredicted RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 CDX4O14627 284 aaPredicted RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 ZBTB14O43829 449 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CEACAM5P06731 702 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 PRDX6P30041 224 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 MC4RP32245 332 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CPOXP36551 454 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 KPNB1Q14974 876 aaKnown RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 NAA25Q14CX7 972 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 SF3A2Q15428 464 aaKnown RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 KHDC1Q4VXA5 237 aaKnown RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 ENPP7Q6UWV6 458 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 FAM151BQ6UXP7 276 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 ACAD11Q709F0 780 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 SLC22A9Q8IVM8 553 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 SCUBE1Q8IWY4 988 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 ULK2Q8IYT8 1036 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 POU5F2Q8N7G0 328 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 EDEM2Q9BV94 578 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 DUSP23Q9BVJ7 150 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 LGR4Q9BXB1 951 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 NUF2Q9BZD4 464 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 ALG9Q9H6U8 611 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 WDR55Q9H6Y2 383 aaPredicted RBP9.99□□□□□ -0.81
VPS53-202ENST00000389040 DCLRE1BQ9H816 532 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 CYP4F12Q9HCS2 524 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 FKBPLQ9UIM3 349 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 TRPM6Q9BX84 2022 aa9.99□□□□□ -0.81
VPS53-202ENST00000389040 IGLV3-16A0A075B6K0 115 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 PRSS38A1L453 326 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms