RNA–Protein interactions for RNA: ENST00000376568.7

DDR1-225, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-225	ENST00000376568	IRF4	Q15306	451 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568		Q6ZNB5	142 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	OR52B6	Q8NGF0	335 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	OR9I1	Q8NGQ6	314 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	SP7	Q8TDD2	431 aa	Predicted RBP	13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	TCF12	Q99081	682 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	SEPHS2	Q99611	448 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	TRIT1	Q9H3H1	467 aa	Known RBP	13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	DNAJC11	Q9NVH1	559 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	PRAMEF33	A0A0G2JMD5	474 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568		A8MUA0	341 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	SNX3	O60493	162 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	ZNF30	P17039	623 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	SMAD4	Q13485	552 aa	Known RBP	13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	C9orf64	Q5T6V5	341 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	GK5	Q6ZS86	529 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	KBTBD6	Q86V97	674 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	NPAS2	Q99743	824 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	LGR4	Q9BXB1	951 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	CCDC177	Q9NQR7	707 aa	Predicted RBP	13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	NCDN	Q9UBB6	729 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	RNF11	Q9Y3C5	154 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	WASH4P	A8MWX3	477 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	COX7A2	P14406	83 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	ACRV1	P26436	265 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	PRIM2	P49643	509 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	COPA	P53621	1224 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	OR4D1	Q15615	310 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	CNPY4	Q8N129	248 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	MAGEC3	Q8TD91	643 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	WDR41	Q9HAD4	459 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	RAD18	Q9NS91	495 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	HRASLS2	Q9NWW9	162 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	LCT	P09848	1927 aa		13.25	□□□□□ -0.29
DDR1-225	ENST00000376568	ZNF487	B1APH4	448 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	HDAC3	O15379	428 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	PVR	P15151	417 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	ST13	P50502	369 aa	Known RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	AGTRAP	Q6RW13	159 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	GALNT10	Q86SR1	603 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	SLC22A15	Q8IZD6	547 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	FAM156A	Q8NDB6	213 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	LRRC3	Q9BY71	257 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	ZDHHC2	Q9UIJ5	367 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	SORCS3	Q9UPU3	1222 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	LOC285095	A0A1B0GVY8	99 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	MYO1G	B0I1T2	1018 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	KDM1A	O60341	852 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	SLC16A8	O95907	504 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	PENK	P01210	267 aa	Predicted RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	VARS	P26640	1264 aa	Known RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	ARRB1	P49407	418 aa	Predicted RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	PHEX	P78562	749 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	PWP1	Q13610	501 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	CDKN3	Q16667	212 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	PRSS36	Q5K4E3	855 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	ANKRD26P1	Q6NSI1	321 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	TWIST2	Q8WVJ9	160 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	VPS33A	Q96AX1	596 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	EXOSC8	Q96B26	276 aa	Known RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	ELSPBP1	Q96BH3	223 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	OTUB1	Q96FW1	271 aa	Predicted RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	NSL1	Q96IY1	281 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	MRGPRX1	Q96LB2	322 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	PPM1M	Q96MI6	270 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	SLC6A18	Q96N87	628 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	BBS4	Q96RK4	519 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568		E7ESA3	106 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	KPNA5	O15131	536 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	CHI3L1	P36222	383 aa	Predicted RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	NAB1	Q13506	487 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	TP53BP2	Q13625	1128 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	LRRC23	Q53EV4	343 aa	Predicted RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	IL23R	Q5VWK5	629 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	LYPLAL1	Q5VWZ2	237 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	TMEM92	Q6UXU6	159 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	ACMSD	Q8TDX5	336 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	RTP4	Q96DX8	246 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	CLPTM1L	Q96KA5	538 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	RAB3IP	Q96QF0	476 aa	Predicted RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	NRTN	Q99748	197 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	KDM4C	Q9H3R0	1056 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	SUFU	Q9UMX1	484 aa		13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	TNPO3	Q9Y5L0	923 aa	Known RBP	13.24	□□□□□ -0.29
DDR1-225	ENST00000376568	COL6A6	A6NMZ7	2263 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	OTC	P00480	354 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	TNF	P01375	233 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	PSMB5	P28074	263 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	MAGEA9	P43362	315 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	GSS	P48637	474 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	CYLC2	Q14093	348 aa	Predicted RBP	13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	SLBP	Q14493	270 aa	Known RBP eCLIP	13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	ACAP2	Q15057	778 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	FAM92B	Q6ZTR7	304 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	RASGEF1A	Q8N9B8	481 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	SMRP1	Q8NCR6	262 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	TGM7	Q96PF1	710 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	TUBGCP5	Q96RT8	1024 aa		13.23	□□□□□ -0.29
DDR1-225	ENST00000376568	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.23	□□□□□ -0.29
DDR1-225	ENST00000376568		A0A1B0GVT2	93 aa		13.23	□□□□□ -0.29

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