RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 AHSA2Q719I0 299 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZDHHC13Q8IUH4 622 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 JAGN1Q8N5M9 183 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TOP6BLQ8N6T0 577 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TXNDC5Q8NBS9 432 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 OR6N1Q8NGY5 312 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 STOML3Q8TAV4 291 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DNAJB14Q8TBM8 379 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SEC14L1Q92503 715 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TIFAQ96CG3 184 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DGCR14Q96DF8 476 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CLPTM1LQ96KA5 538 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NAT9Q9BTE0 207 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SAMD10Q9BYL1 202 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MED28Q9H204 178 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RMI1Q9H9A7 625 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SDHAF3Q9NRP4 125 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GRHL1Q9NZI5 618 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DNAJB11Q9UBS4 358 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF69Q9UC07 566 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 EGFL7Q9UHF1 273 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MAGI1Q96QZ7 1491 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FLT1P17948 1338 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FAM240BA0A1B0GVZ2 78 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 IRGMA1A4Y4 181 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 NPC1O15118 1278 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PMM2O15305 246 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 BEST1O76090 585 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SLC25A14O95258 325 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 AHSA1O95433 338 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ADH1CP00326 375 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ITGB3P05106 788 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ELFN1P0C7U0 828 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 HOXA10P31260 410 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 KLK7P49862 253 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 CLCNKAP51800 687 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 EN1Q05925 392 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM69Q5SWH9 247 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L6PQ6QN14 398 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 GPSM1Q86YR5 675 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 UBQLNLQ8IYU4 475 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SLC34A3Q8N130 599 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SPATA6LQ8N4H0 392 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 MINDY1Q8N5J2 469 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 OR8D1Q8WZ84 308 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ELMO3Q96BJ8 720 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 MSI2Q96DH6 328 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PGAP3Q96FM1 320 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 TARS2Q9BW92 718 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ARNT2Q9HBZ2 717 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF334Q9HCZ1 680 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 POLMQ9NP87 494 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 XPNPEP1Q9NQW7 623 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 BET1LQ9NYM9 111 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 YTHDC2Q9H6S0 1430 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 A0A0G2JN53 185 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 HTR3EA5X5Y0 456 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 NT5C1B-RDH14C9J2C7 533 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 NEDD8-MDP1E9PL57 170 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FFAR3O14843 346 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FANCGO15287 622 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 GPR42O15529 346 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ONECUT3O60422 494 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SERPINB7O75635 380 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 STK16O75716 305 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SCAF4O95104 1147 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 MMP1P03956 469 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 GIFP27352 417 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 CD1CP29017 333 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 TUFMP49411 452 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PIN1Q13526 163 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PRKD1Q15139 912 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 OVOS1Q6IE37 1185 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 CYB5D1Q6P9G0 228 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 GCNT7Q6ZNI0 430 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 NUDT13Q86X67 352 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FIBCD1Q8N539 461 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 C11orf42Q8N5U0 333 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FADS6Q8N9I5 356 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 OR10H4Q8NGA5 316 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 HERVK_113Q902F9 699 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SGSM3Q96HU1 749 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FCRL2Q96LA5 508 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 MFFQ9GZY8 342 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 MAGEE1Q9HCI5 957 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 MID1IP1Q9NPA3 183 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PRMT7Q9NVM4 692 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SPATA6Q9NWH7 488 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 MED11Q9P086 117 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 AMACRQ9UHK6 382 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 DHDHQ9UQ10 334 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PNMA6FA0A0J9YX94 578 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 NPIPA2E9PIF3 369 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 NPIPA3F8WFD2 350 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 CLPTM1O96005 669 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 GCH1P30793 250 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ACSL1P33121 698 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 HTR2BP41595 481 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms