RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PUM1Q14671 1186 aaKnown RBP eCLIP21.57■■□□□ 1.04
SHMT1-203ENST00000354098 NKAIN2Q5VXU1 208 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 NEK10Q6ZWH5 1172 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 TBC1D21Q8IYX1 336 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 TSPAN17Q96FV3 270 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 TRIT1Q9H3H1 467 aaKnown RBP21.57■■□□□ 1.04
SHMT1-203ENST00000354098 POPDC3Q9HBV1 291 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 KCNK4Q9NYG8 393 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 TDRKHQ9Y2W6 561 aaKnown RBP21.57■■□□□ 1.04
SHMT1-203ENST00000354098 KRT87PA6NCN2 255 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 MPC1LP0DKB6 136 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 NDUFS1P28331 727 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 GPR3P46089 330 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 BDKRB1P46663 353 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 RGS4P49798 205 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 SERPINB9P50453 376 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 CCL7P80098 99 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 CCSMST1Q4G0I0 132 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 UNC5DQ6UXZ4 953 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 RBM12BQ8IXT5 1001 aaKnown RBP21.56■■□□□ 1.04
SHMT1-203ENST00000354098 LDHAL6BQ9BYZ2 381 aaPredicted RBP21.56■■□□□ 1.04
SHMT1-203ENST00000354098 UCK1Q9HA47 277 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 CTNNAL1Q9UBT7 734 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 FETUBQ9UGM5 382 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 PCDHGA1Q9Y5H4 931 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 IGHV1OR21-1A0A087WYE8 117 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 A0A1W2PQM1 296 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 EIF3FO00303 357 aaPredicted RBP21.56■■□□□ 1.04
SHMT1-203ENST00000354098 DKK1O94907 266 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 C1orf105O95561 183 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 ALDOAP04075 364 aaKnown RBP21.56■■□□□ 1.04
SHMT1-203ENST00000354098 SLCO1A2P46721 670 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 AMZ1Q400G9 498 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 SPATA6LQ8N4H0 392 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 OR52E1Q8NGJ3 308 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 ASB11Q8WXH4 323 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 FOPNLQ96NB1 174 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 SYTL2Q9HCH5 934 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 SNX15Q9NRS6 342 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 ADAMTS6Q9UKP5 1117 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 IKZF3Q9UKT9 509 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 PLAGL1Q9UM63 463 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 RP1P56715 2156 aa21.56■■□□□ 1.04
SHMT1-203ENST00000354098 CCDC151A5D8V7 595 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 LILRA5A6NI73 299 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 PSIP1O75475 530 aaKnown RBP21.55■■□□□ 1.04
SHMT1-203ENST00000354098 KRT38O76015 456 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 RPLP0P05388 317 aaKnown RBP21.55■■□□□ 1.04
SHMT1-203ENST00000354098 NUDT17P0C025 328 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 SLC35E2BP0CK96 405 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 CD1CP29017 333 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 MAPK9P45984 424 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 ID4P47928 161 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 CLDN6P56747 220 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 ILKQ13418 452 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 PLCL1Q15111 1095 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 DHRS13Q6UX07 377 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 RAPH1Q70E73 1250 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 EPS8L3Q8TE67 593 aaKnown RBP21.55■■□□□ 1.04
SHMT1-203ENST00000354098 ZFPM2Q8WW38 1151 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 UNKQ9C0B0 810 aaKnown RBP21.55■■□□□ 1.04
SHMT1-203ENST00000354098 ABCG4Q9H172 646 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 LRRN3Q9H3W5 708 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 TBK1Q9UHD2 729 aa21.55■■□□□ 1.04
SHMT1-203ENST00000354098 APOBEC2Q9Y235 224 aaKnown RBP21.55■■□□□ 1.04
SHMT1-203ENST00000354098 CNOT1A5YKK6 2376 aaKnown RBP21.54■■□□□ 1.04
SHMT1-203ENST00000354098 SMIM23A6NLE4 172 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 ARHGEF33A8MVX0 844 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 TRIM49D1C9J1S8 452 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 OPA1O60313 960 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 TYRP1P17643 537 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 CSRP3P50461 194 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 GRB7Q14451 532 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 EEF1AKMT2Q5JPI9 291 aaKnown RBP21.54■■□□□ 1.04
SHMT1-203ENST00000354098 PPM1JQ5JR12 505 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 USP53Q70EK8 1073 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 RASGRP3Q8IV61 690 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 MYO1HQ8N1T3 1032 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 NKAPQ8N5F7 415 aaKnown RBP21.54■■□□□ 1.04
SHMT1-203ENST00000354098 OR4E2Q8NGC2 313 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 DLG3Q92796 817 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 PDLIM5Q96HC4 596 aaKnown RBP21.54■■□□□ 1.04
SHMT1-203ENST00000354098 XKR8Q9H6D3 395 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 SYNDIG1Q9H7V2 258 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 RDH14Q9HBH5 336 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 OGFRQ9NZT2 677 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 PSMC3IPQ9P2W1 217 aaPredicted RBP21.54■■□□□ 1.04
SHMT1-203ENST00000354098 POLG2Q9UHN1 485 aa21.54■■□□□ 1.04
SHMT1-203ENST00000354098 ATXN7L1Q9ULK2 861 aaPredicted RBP21.54■■□□□ 1.04
SHMT1-203ENST00000354098 GFYI3L273 518 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 ERLIN1O75477 346 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 UBXN7O94888 489 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 SNRPAP09012 282 aaKnown RBP21.53■■□□□ 1.04
SHMT1-203ENST00000354098 CCDC166P0CW27 439 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 CNTFP26441 200 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 CFHR1Q03591 330 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 LRRC8EQ6NSJ5 796 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 TAOK1Q7L7X3 1001 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 DCUN1D3Q8IWE4 304 aa21.53■■□□□ 1.04
SHMT1-203ENST00000354098 LCN9Q8WX39 176 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms