RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 NPIPA2E9PIF3 369 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 NPIPA5E9PKD4 350 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 NPIPA3F8WFD2 350 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 CCR5P51681 352 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 KCNK10P57789 538 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 CYP51A1Q16850 503 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 GPR33Q49SQ1 333 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 C1orf186Q6ZWK4 172 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TICAM1Q8IUC6 712 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 MIER2Q8N344 545 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 C1orf127Q8N9H9 656 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 CPEB3Q8NE35 698 aaKnown RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF599Q96NL3 588 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RACGAP1Q9H0H5 632 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 UCKL1Q9NWZ5 548 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 NPIPA1Q9UND3 350 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 OSGIN2Q9Y236 505 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 INTS1Q8N201 2190 aaKnown RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 hCG_1809904A0A1W2PP81 198 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 A0A1W2PPE2 198 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 A0A1W2PR64 198 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 A0A1W2PRV1 198 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RNF103O00237 685 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TM9SF1O15321 606 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 EDNRBP24530 442 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 PNLIPRP1P54315 467 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 DSC3Q14574 896 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 PLK5Q496M5 336 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 FAM183BPQ6ZVS7 135 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 USP49Q70CQ1 688 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF761Q86XN6 746 aaPredicted RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 GSTCDQ8NEC7 633 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 OR8K5Q8NH50 307 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TRMT10AQ8TBZ6 339 aaKnown RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 CHFRQ96EP1 664 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TRMT2BQ96GJ1 504 aaKnown RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 CD180Q99467 661 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 KCNMB3Q9NPA1 279 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TMCO1Q9UM00 188 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 SHPRHQ149N8 1683 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TEX51A0A1B0GUA7 166 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TRIM38O00635 465 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 CDH16O75309 829 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 VAPBO95292 243 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 LRPAP1P30533 357 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 SLC1A3P43003 542 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RPS9P46781 194 aaKnown RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 ANTXR2P58335 489 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RAB35Q15286 201 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 MAPK14Q16539 360 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 FSTL4Q6MZW2 842 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 NOXRED1Q6NXP6 359 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RTL4Q6ZR62 310 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 DCUN1D3Q8IWE4 304 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 ETFBKMTQ8IXQ9 262 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 OR5B17Q8NGF7 314 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 SLC13A3Q8WWT9 602 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 B3GNT5Q9BYG0 378 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RXFP1Q9HBX9 757 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 POFUT2Q9Y2G5 429 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 IFT52Q9Y366 437 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 NAALAD2Q9Y3Q0 740 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 LOC102723532A0A0G2JNH3 316 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 SNAP91O60641 907 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 UGT1A6P19224 532 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 NR1D1P20393 614 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 PWP1Q13610 501 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 HMBOX1Q6NT76 420 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 NEPROQ6NW34 567 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 LCLAT1Q6UWP7 414 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RNF111Q6ZNA4 994 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 KCNK18Q7Z418 384 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 CSNK1A1LQ8N752 337 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 RTL3Q8N8U3 475 aaKnown RBP8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TNIP2Q8NFZ5 429 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 INPP5DQ92835 1189 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 TMEM27Q9HBJ8 222 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 FGF21Q9NSA1 209 aa8.24□□□□□ -1.09
HMGB1-203ENST00000341423 H0Y8X5 98 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 DDX3YO15523 660 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 LILRB5O75023 590 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 EPORP19235 508 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 OAS2P29728 719 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 RASSF2P50749 326 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 LY6DQ14210 128 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 INPP5AQ14642 412 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 AMIGO1Q86WK6 493 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 XRN1Q8IZH2 1706 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 TMEM102Q8N9M5 508 aaPredicted RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CLHC1Q8NHS4 586 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 SPATA13Q96N96 652 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 MYLK2Q9H1R3 596 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CXorf56Q9H5V9 222 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 ACOT9Q9Y305 439 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CFAP20Q9Y6A4 193 aaKnown RBP8.23□□□□□ -1.09
HMGB1-203ENST00000341423 ANKUB1A6NFN9 424 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 CCDC188H7C350 402 aa8.23□□□□□ -1.09
HMGB1-203ENST00000341423 TMEM189-UBE2V1I3L0A0 370 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms