RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SLC16A6O15403 523 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 B3GALT4O96024 378 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 SERPINA1P01009 418 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 C1QCP02747 245 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 DNAJB2P25686 324 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 IFNA8P32881 189 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 SERPINH1P50454 418 aaKnown RBP13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 SCNN1GP51170 649 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 ARPP19P56211 112 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 ERVK-8P63133 956 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 CYP4F2P78329 520 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 GPLD1P80108 840 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 CYP4F3Q08477 520 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 BRMS1LQ5PSV4 323 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 PRSS48Q7RTY5 328 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 MILR1Q7Z6M3 343 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 APOBEC3FQ8IUX4 373 aaKnown RBP13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 PGBD5Q8N414 524 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF548Q8NEK5 533 aaPredicted RBP13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 FYTTD1Q96QD9 318 aaKnown RBP13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 KCNS3Q9BQ31 491 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 POLR3HQ9Y535 204 aaPredicted RBP13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 ORC6Q9Y5N6 252 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 ARL5AQ9Y689 179 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 TSC2P49815 1807 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 UBA6A0AVT1 1052 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 OR2A25A4D2G3 310 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 GOLGA8CPA6NN73 597 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 CXCR6O00574 342 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 CTDSP2O14595 271 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 EDNRBP24530 442 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 CCNCP24863 283 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 HOXA11P31270 313 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 CCR1P32246 355 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 PIK3CGP48736 1102 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 P2RX3P56373 397 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 RFTN2Q52LD8 501 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 INTS6LQ5JSJ4 861 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 ANKS6Q68DC2 871 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 PRR23CQ6ZRP0 262 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 TAC4Q86UU9 113 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 NATD1Q8N6N6 113 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 TSGA13Q96PP4 275 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC9A7Q96T83 725 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 SDHCQ99643 169 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 BBS2Q9BXC9 721 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 NUAK2Q9H093 628 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 VPS4AQ9UN37 437 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 NPEPPSL1A6NEC2 478 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 KATNA1O75449 491 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 TGFB3P10600 412 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 FDXRP22570 491 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 DSC2Q02487 901 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 MADCAM1Q13477 382 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 SMU1Q2TAY7 513 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 XKR7Q5GH72 579 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 RGMBQ6NW40 437 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 LRRC8DQ7L1W4 858 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 SVOPLQ8N434 492 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 OR13C4Q8NGS5 318 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 TSPEARQ8WU66 669 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 FBLIM1Q8WUP2 373 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 SMOQ99835 787 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 HOXC10Q9NYD6 342 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 EIF2B4Q9UI10 523 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 SSC5DA1L4H1 1573 aa13.2□□□□□ -0.3
CCDC88C-201ENST00000331194 MATN3O15232 486 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 TSPAN3O60637 253 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 CREMQ03060 361 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 PLEKHG6Q3KR16 790 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 TBRG1Q3YBR2 411 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 PNCKQ6P2M8 343 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 CYP20A1Q6UW02 462 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ADHFE1Q8IWW8 467 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 UBQLNLQ8IYU4 475 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 OR8H2Q8N162 312 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 LRRC52Q8N7C0 313 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ZMIZ2Q8NF64 920 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF566Q969W8 418 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 RETREG1Q9H6L5 497 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC25A37Q9NYZ2 338 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ABCG2Q9UNQ0 655 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 A0A0X1KG70 313 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 KRT87PA6NCN2 255 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 SAGE2PA6NJ88 616 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 MOCS2O96007 188 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 GNG2P59768 71 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 SLAMF1Q13291 335 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 LRRC26Q2I0M4 334 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 PUS10Q3MIT2 529 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 KLHDC8BQ8IXV7 354 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 KIAA1958Q8N8K9 716 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 CLHC1Q8NHS4 586 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 DNASE1L2Q92874 299 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 CHCHD6Q9BRQ6 235 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 NFKBIZQ9BYH8 718 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 PRKD2Q9BZL6 878 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 CCDC177Q9NQR7 707 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 RNF6Q9Y252 685 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 WBP11Q9Y2W2 641 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms