RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZNF517Q6ZMY9 492 aaPredicted RBP13.23□□□□□ -0.29
SKA3-201ENST00000298260 Q6ZSR9 355 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 GLRX5Q86SX6 157 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 OSTM1Q86WC4 334 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 FAM217AQ8IXS0 508 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 CHPFQ8IZ52 775 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 KIAA1958Q8N8K9 716 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 KLHL5Q96PQ7 755 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 ZNF408Q9H9D4 720 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 MUTYHQ9UIF7 546 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 BTBD3Q9Y2F9 522 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 FNDC3AQ9Y2H6 1198 aaKnown RBP13.23□□□□□ -0.29
SKA3-201ENST00000298260 ZNF451Q9Y4E5 1061 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 RGS5O15539 181 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 MTSS1O43312 755 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 ADRA1AP35348 466 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 SLC15A1P46059 708 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 RFX2P48378 723 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 SCNN1GP51170 649 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 LCP2Q13094 533 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 TJAP1Q5JTD0 557 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 LINC00299Q6ZSB3 139 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 LRRC8DQ7L1W4 858 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 EFL1Q7Z2Z2 1120 aaKnown RBP13.23□□□□□ -0.29
SKA3-201ENST00000298260 RAB44Q7Z6P3 723 aaPredicted RBP13.23□□□□□ -0.29
SKA3-201ENST00000298260 ZFAND4Q86XD8 727 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 FBXO39Q8N4B4 442 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 ATPAF2Q8N5M1 289 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 ZNF548Q8NEK5 533 aaPredicted RBP13.23□□□□□ -0.29
SKA3-201ENST00000298260 OR5K1Q8NHB7 308 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 AFG1LQ8WV93 481 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 VPS35Q96QK1 796 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 MED10Q9BTT4 135 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 COLEC11Q9BWP8 271 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 WDCPQ9H6R7 721 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 PRMT7Q9NVM4 692 aaPredicted RBP13.23□□□□□ -0.29
SKA3-201ENST00000298260 USE1Q9NZ43 259 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 FBXW11Q9UKB1 542 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 SBF1O95248 1867 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 SOWAHBA6NEL2 793 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 SLC16A6O15403 523 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 WBP4O75554 376 aaKnown RBP13.22□□□□□ -0.29
SKA3-201ENST00000298260 ZNF682O95780 498 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 FHP07954 510 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 CYP2A7P20853 494 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 ICAM3P32942 547 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 BACE1P56817 501 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 FXNQ16595 210 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 PLEKHG6Q3KR16 790 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 ZNF484Q5JVG2 852 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 RANBP10Q6VN20 620 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 PAQR9Q6ZVX9 377 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 CYP4Z2PQ8N1L4 340 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 UBASH3BQ8TF42 649 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 PIK3R3Q92569 461 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 GTF2H4Q92759 462 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 SLC38A4Q969I6 547 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 RNF170Q96K19 258 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 SPATA33Q96N06 139 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 ATOH8Q96SQ7 321 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 SLC39A8Q9C0K1 460 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 ABCG8Q9H221 673 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 MPP6Q9NZW5 540 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 CDH9Q9ULB4 789 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 RNF112Q9ULX5 631 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 UBA6A0AVT1 1052 aaPredicted RBP13.22□□□□□ -0.29
SKA3-201ENST00000298260 FAM234BA2RU67 622 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 NCAM2O15394 837 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 DNAJB5O75953 348 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 MED26O95402 600 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 UQCRC1P31930 480 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 CA5AP35218 305 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 OR3A3P47888 321 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 TIGD6Q17RP2 521 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 CDONQ4KMG0 1287 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 RFTN2Q52LD8 501 aaPredicted RBP13.22□□□□□ -0.29
SKA3-201ENST00000298260 COQ5Q5HYK3 327 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 SYCE2Q6PIF2 218 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 PAQR3Q6TCH7 311 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 METTL7BQ6UX53 244 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 FAM83AQ86UY5 434 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 TSPAN17Q96FV3 270 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 OR2A14Q96R47 310 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 TMEM209Q96SK2 561 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 ITPAQ9BY32 194 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 TIGARQ9NQ88 270 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 SLC25A37Q9NYZ2 338 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 EIF2B4Q9UI10 523 aaKnown RBP13.22□□□□□ -0.29
SKA3-201ENST00000298260 TIMM13Q9Y5L4 95 aaPredicted RBP13.22□□□□□ -0.29
SKA3-201ENST00000298260 LCTP09848 1927 aa13.22□□□□□ -0.29
SKA3-201ENST00000298260 MEIOCA2RUB1 952 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 ECI2O75521 394 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 INSRRP14616 1297 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 CTSKP43235 329 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 GPR50Q13585 617 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 DOC2BQ14184 412 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 MFSD10Q14728 455 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 BAK1Q16611 211 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 SPANXN2Q5MJ10 180 aa13.21□□□□□ -0.29
SKA3-201ENST00000298260 CLEC20AQ6ZU45 233 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms