RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 MSLNQ13421 630 aaPredicted RBP12.37□□□□□ -0.43
CD44-203ENST00000278386 BRD3Q15059 726 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 DBN1Q16643 649 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 DEFB110Q30KQ9 67 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 P3H1Q32P28 736 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 NADK2Q4G0N4 442 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 FAM69BQ5VUD6 431 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 ZNF517Q6ZMY9 492 aaPredicted RBP12.37□□□□□ -0.43
CD44-203ENST00000278386 TRIM73Q86UV7 250 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TMTC1Q8IUR5 882 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 GPR135Q8IZ08 494 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 CLDN19Q8N6F1 224 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 UBL4BQ8N7F7 174 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 FAM71DQ8N9W8 422 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TTC13Q8NBP0 860 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 ELMO1Q92556 727 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TFGQ92734 400 aaPredicted RBP12.37□□□□□ -0.43
CD44-203ENST00000278386 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.37□□□□□ -0.43
CD44-203ENST00000278386 PANX2Q96RD6 677 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 C19orf43Q9BQ61 176 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 NLNQ9BYT8 704 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 PITPNM3Q9BZ71 974 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TFB2MQ9H5Q4 396 aaKnown RBP12.37□□□□□ -0.43
CD44-203ENST00000278386 ARNT2Q9HBZ2 717 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 SERTAD3Q9UJW9 196 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 AMFRQ9UKV5 643 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TDRKHQ9Y2W6 561 aaKnown RBP12.37□□□□□ -0.43
CD44-203ENST00000278386 ZNF451Q9Y4E5 1061 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 SEC16AO15027 2179 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 BLACEA4D250 179 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 CLEC18AA5D8T8 446 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 BTNL10A8MVZ5 291 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 H7C0S8 307 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 QSOX1O00391 747 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 ZNF185O15231 689 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 ZNF749O43361 778 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 GSTM1P09488 218 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 AGXTP21549 392 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 MSNP26038 577 aaKnown RBP12.36□□□□□ -0.43
CD44-203ENST00000278386 VAV2P52735 878 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 GSTM4Q03013 218 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 BOP1Q14137 746 aaKnown RBP12.36□□□□□ -0.43
CD44-203ENST00000278386 NCF4Q15080 339 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 PARP6Q2NL67 630 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 ZNF789Q5FWF6 425 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 KCTD11Q693B1 232 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 SPESP1Q6UW49 350 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 CLEC18BQ6UXF7 455 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 CDHR3Q6ZTQ4 885 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 PEX26Q7Z412 305 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 RAB43Q86YS6 212 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 ADGRF3Q8IZF5 1079 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 C19orf47Q8N9M1 422 aaKnown RBP12.36□□□□□ -0.43
CD44-203ENST00000278386 CLEC18CQ8NCF0 446 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 OR5AR1Q8NGP9 310 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 ADAMTS17Q8TE56 1095 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 STYXQ8WUJ0 223 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 TRAPPC9Q96Q05 1148 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 LACRTQ9GZZ8 138 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 IRAK4Q9NWZ3 460 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 LUZP4Q9P127 313 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 MAP10Q9P2G4 905 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 PACSIN2Q9UNF0 486 aaPredicted RBP12.36□□□□□ -0.43
CD44-203ENST00000278386 ICKQ9UPZ9 632 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 ASF1AQ9Y294 204 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 PADI2Q9Y2J8 665 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 PCM1Q15154 2024 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 PCSK5Q92824 1860 aa12.36□□□□□ -0.43
CD44-203ENST00000278386 OR51F1A6NGY5 319 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 A6NL46 340 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 LIN7AO14910 233 aaPredicted RBP12.35□□□□□ -0.43
CD44-203ENST00000278386 DPM1O60762 260 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 AP2A2O94973 939 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 AGFG2O95081 481 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 METTL18O95568 372 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 AP2A1O95782 977 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 FTH1P02794 183 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 HBQ1P09105 142 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 MSL3P1P0C860 447 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 UGT2B7P16662 529 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 GNLYP22749 145 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 OTX2P32243 289 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 SHMT2P34897 504 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 NSG1P42857 185 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 ZNF75DP51815 510 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 RRADP55042 308 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 GDF10P55107 478 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 ATP1A4Q13733 1029 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 ITIH4Q14624 930 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 KYNUQ16719 465 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 ZNF658BQ4V348 819 aaPredicted RBP12.35□□□□□ -0.43
CD44-203ENST00000278386 CCDC38Q502W7 563 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 RAD9BQ6WBX8 426 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 KLHDC8BQ8IXV7 354 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 PIANPQ8IYJ0 282 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 LRRC57Q8N9N7 239 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 DNAAF3Q8N9W5 541 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 FDCSPQ8NFU4 85 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 CDKN2AIPNLQ96HQ2 116 aa12.35□□□□□ -0.43
CD44-203ENST00000278386 SGSM3Q96HU1 749 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms