RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ZNF574Q6ZN55 896 aaPredicted RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 TRMT10CQ7L0Y3 403 aaKnown RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 TMPRSS7Q7RTY8 843 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 PIWIL4Q7Z3Z4 852 aaKnown RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 B3GNT8Q7Z7M8 397 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 CEP97Q8IW35 865 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TBC1D21Q8IYX1 336 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 OR4E2Q8NGC2 313 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 OR52E1Q8NGJ3 308 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 OR10G6Q8NH81 332 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 EEF1AKMT1Q8WVE0 214 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 ZFPM2Q8WW38 1151 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 NCSTNQ92542 709 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 RSC1A1Q92681 617 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 AHCYL2Q96HN2 611 aaKnown RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 CYTH2Q99418 400 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TRIT1Q9H3H1 467 aaKnown RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 XKR8Q9H6D3 395 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 CAB39LQ9H9S4 337 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TXNDC16Q9P2K2 825 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 KLK13Q9UKR3 277 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 SLC39A10Q9ULF5 831 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 PLAGL1Q9UM63 463 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TDRKHQ9Y2W6 561 aaKnown RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 MATN4O95460 622 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 CPNE6O95741 557 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 ADRB1P08588 477 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 JUPP14923 745 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 AMD1P17707 334 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 CD9P21926 228 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 NDUFS1P28331 727 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 SKIV2L2P42285 1042 aaKnown RBP12.41□□□□□ -0.42
SS18-202ENST00000269138 BDKRB1P46663 353 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 PDX1P52945 283 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 GPLD1P80108 840 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 TARDBPQ13148 414 aaKnown RBP eCLIP12.41□□□□□ -0.422e-8■■□□□ 13.7
SS18-202ENST00000269138 SQSTM1Q13501 440 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 NAB1Q13506 487 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 UAP1Q16222 522 aaPredicted RBP12.41□□□□□ -0.42
SS18-202ENST00000269138 MAP9Q49MG5 647 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 UGT3A1Q6NUS8 523 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 UNC5DQ6UXZ4 953 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 RBM44Q6ZP01 1051 aaKnown RBP12.41□□□□□ -0.42
SS18-202ENST00000269138 TMPRSS12Q86WS5 348 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 DCBLD1Q8N8Z6 715 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 LMNTD1Q8N9Z9 388 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 OR5K2Q8NHB8 316 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 LCN9Q8WX39 176 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 GPR22Q99680 433 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 PARD6BQ9BYG5 372 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 SEMA6CQ9H3T2 930 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 ICKQ9UPZ9 632 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 CLCA2Q9UQC9 943 aa12.41□□□□□ -0.42
SS18-202ENST00000269138 A0A087WUV0 522 aaPredicted RBP12.4□□□□□ -0.42
SS18-202ENST00000269138 HMX2A2RU54 273 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 OR6C74A6NCV1 312 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 AGRPO00253 132 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 ZW10O43264 779 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 DUX1O43812 170 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 CSO75390 466 aaKnown RBP12.4□□□□□ -0.42
SS18-202ENST00000269138 TCEA3O75764 348 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 C1orf105O95561 183 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 TSPAN12O95859 305 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 ABHD2P08910 425 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 SPRP35270 261 aaPredicted RBP12.4□□□□□ -0.42
SS18-202ENST00000269138 GMPRP36959 345 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 LIMK2P53671 638 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 GFERP55789 205 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 PPP1CAP62136 330 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 PDAP1Q13442 181 aaKnown RBP12.4□□□□□ -0.42
SS18-202ENST00000269138 BMPR2Q13873 1038 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 GRB7Q14451 532 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 SLC29A2Q14542 456 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 USP10Q14694 798 aaKnown RBP12.4□□□□□ -0.42
SS18-202ENST00000269138 ISXQ2M1V0 245 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 WDR93Q6P2C0 686 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 WDR48Q8TAF3 677 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 SLC44A1Q8WWI5 657 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 LINGO1Q96FE5 620 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 SCNM1Q9BWG6 230 aa12.4□□□□□ -0.42
SS18-202ENST00000269138 CACNA1AO00555 2505 aa12.4□□□□□ -0.43
SS18-202ENST00000269138 ARHGEF33A8MVX0 844 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 POC1B-GALNT4F8VUJ3 575 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 BTN3A3O00478 584 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 PHGDHO43175 533 aaKnown RBP12.39□□□□□ -0.43
SS18-202ENST00000269138 ITGA2BP08514 1039 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 MPC1LP0DKB6 136 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 CBSLP0DN79 551 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 ENO3P13929 434 aaPredicted RBP12.39□□□□□ -0.43
SS18-202ENST00000269138 CBSP35520 551 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 POU4F1Q01851 419 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 ZFP36L1Q07352 338 aaKnown RBP12.39□□□□□ -0.43
SS18-202ENST00000269138 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.39□□□□□ -0.43
SS18-202ENST00000269138 SNAP47Q5SQN1 464 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 NEK10Q6ZWH5 1172 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 RASGRP3Q8IV61 690 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 SLITRK4Q8IW52 837 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 GALNT15Q8N3T1 639 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 AENQ8WTP8 325 aaKnown RBP12.39□□□□□ -0.43
SS18-202ENST00000269138 ANKRD49Q8WVL7 239 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms