RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 C22orf39Q6P5X5 142 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 DPY19L3Q6ZPD9 716 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 RFLNAQ6ZTI6 216 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 TSPAN33Q86UF1 283 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 AADATQ8N5Z0 425 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 BHLHE22Q8NFJ8 381 aaPredicted RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 DNAJB14Q8TBM8 379 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 FEM1CQ96JP0 617 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 C3orf30Q96M34 536 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 CAMK1GQ96NX5 476 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 CLPBQ9H078 707 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 IL21RQ9HBE5 538 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 NUP214P35658 2090 aaPredicted RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 ILVBLA1L0T0 632 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 CCDC160A6NGH7 325 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 TRPC5OSA6NMA1 111 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF195O14628 629 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 PFDN6O15212 129 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 KDELR3O43731 214 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 PRAMEF1O95521 474 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 STAMBPO95630 424 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 PYGLP06737 847 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 XPAP23025 273 aaPredicted RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 HTR7P34969 479 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 IL2P60568 153 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 BOP1Q14137 746 aaKnown RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 ACAP2Q15057 778 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 TRMT5Q32P41 509 aaKnown RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 KIAA0895LQ68EN5 471 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 FBXL19Q6PCT2 694 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 DNAJC14Q6Y2X3 702 aaPredicted RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 TMEM151AQ8N4L1 468 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 OR2T34Q8NGX1 318 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 SPDL1Q96EA4 605 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 LRGUKQ96M69 825 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 TM9SF3Q9HD45 589 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 MCM8Q9UJA3 840 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 SCML1Q9UN30 329 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 IGLV3-10A0A075B6K4 115 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 LOC285095A0A1B0GVY8 99 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 F8W8V4 182 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 TRAFD1O14545 582 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 UBFD1O14562 309 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PEX1O43933 1283 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF189O75820 626 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 MT-ND1P03886 318 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PKMP14618 531 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 NELFEP18615 380 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 STC1P52823 247 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 GRB7Q14451 532 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 TCEA2Q15560 299 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 HLA-BQ31612 363 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 GPSM1Q86YR5 675 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 STAG3L4Q8TBR4 150 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PTCD2Q8WV60 388 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 VPS33AQ96AX1 596 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SERPINI1Q99574 410 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 EBF2Q9HAK2 575 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 ZFYVE1Q9HBF4 777 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 CA5BQ9Y2D0 317 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 APC2O95996 2303 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PABPN1LA6NDY0 278 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SDHDO14521 159 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 LEFTY1O75610 366 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 OR4F21O95013 312 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SLC25A14O95258 325 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PRLP01236 227 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PRNPP04156 253 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 COL6A2P12110 1019 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF37AP17032 561 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 CD27P26842 260 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PEX2P28328 305 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PBLDP30039 288 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 CCNHP51946 323 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 ADPRHP54922 357 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 NRF1Q16656 503 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 C6orf10Q5SRN2 563 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SWT1Q5T5J6 900 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 AFMIDQ63HM1 303 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 ANKS6Q68DC2 871 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SMYD5Q6GMV2 418 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 UGT3A1Q6NUS8 523 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 MBOAT1Q6ZNC8 495 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 KIAA0408Q6ZU52 694 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 USP30Q70CQ3 517 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 MILR1Q7Z6M3 343 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 RHBDD1Q8TEB9 315 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 ALG14Q96F25 216 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 TDRD1Q9BXT4 1180 aaKnown RBP8.49□□□□□ -1.05
VPS4B-201ENST00000238497 CAPN10Q9HC96 672 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SYTL2Q9HCH5 934 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 FZD3Q9NPG1 666 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 TM7SF3Q9NS93 570 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 SNX11Q9Y5W9 270 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 WASH4PA8MWX3 477 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 MRASO14807 208 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 HSPA7P48741 367 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 DIO3P55073 304 aa8.49□□□□□ -1.05
VPS4B-201ENST00000238497 PPP2CBP62714 309 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms