RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 KLHL22Q53GT1 634 aa13.34□□□□□ -0.27
SF3A1-201ENST00000215793 KREMEN2Q8NCW0 462 aa13.34□□□□□ -0.27
SF3A1-201ENST00000215793 KAT2AQ92830 837 aa13.34□□□□□ -0.27
SF3A1-201ENST00000215793 GTPBP3Q969Y2 492 aaKnown RBP13.34□□□□□ -0.27
SF3A1-201ENST00000215793 DNAJB4Q9UDY4 337 aa13.34□□□□□ -0.27
SF3A1-201ENST00000215793 MRPS17Q9Y2R5 130 aaKnown RBP13.34□□□□□ -0.27
SF3A1-201ENST00000215793 A0A0G2JLL6 359 aaPredicted RBP13.33□□□□□ -0.27
SF3A1-201ENST00000215793 DUXAA6NLW8 204 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 FFAR2O15552 330 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 CAPN15O75808 1086 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 GALK1P51570 392 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 CRISP3P54108 245 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 HSF2Q03933 536 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 TIGD5Q53EQ6 642 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 PRRT2Q7Z6L0 340 aaPredicted RBP13.33□□□□□ -0.27
SF3A1-201ENST00000215793 AMZ2Q86W34 360 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 RPL10LQ96L21 214 aaKnown RBP13.33□□□□□ -0.27
SF3A1-201ENST00000215793 GPR88Q9GZN0 384 aa13.33□□□□□ -0.27
SF3A1-201ENST00000215793 PGRP06401 933 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 NCK1P16333 377 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 SLC7A1P30825 629 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 PRMT2P55345 433 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 EEFSECP57772 596 aaKnown RBP13.33□□□□□ -0.28
SF3A1-201ENST00000215793 C1QTNF8P60827 252 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 E2F2Q14209 437 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 PTF1AQ7RTS3 328 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 ADGRG6Q86SQ4 1221 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 TMEM110Q86TL2 294 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 DBF4BQ8NFT6 615 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 OXSMQ9NWU1 459 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 CLEC4AQ9UMR7 237 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 E7ENX8 843 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 ENPP3O14638 875 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 TLX3O43711 291 aaPredicted RBP13.33□□□□□ -0.28
SF3A1-201ENST00000215793 TIE1P35590 1138 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 SLC18A1P54219 525 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 SWI5Q1ZZU3 235 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 ASTE1Q2TB18 679 aaPredicted RBP13.33□□□□□ -0.28
SF3A1-201ENST00000215793 ZDHHC24Q6UX98 284 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 CLEC20AQ6ZU45 233 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 IFNLR1Q8IU57 520 aaPredicted RBP13.33□□□□□ -0.28
SF3A1-201ENST00000215793 COX18Q8N8Q8 333 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 ESAMQ96AP7 390 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 COPS4Q9BT78 406 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 SRMSQ9H3Y6 488 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 CIDEBQ9UHD4 219 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 PITPNM1O00562 1244 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 B3GALT2O43825 422 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 RBMXL2O75526 392 aaKnown RBP13.33□□□□□ -0.28
SF3A1-201ENST00000215793 KCNA5P22460 613 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 CPN2P22792 545 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 YAP1P46937 504 aaKnown RBP13.33□□□□□ -0.28
SF3A1-201ENST00000215793 BLKP51451 505 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 MTTPP55157 894 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 PPP3R1P63098 170 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 VITQ6UXI7 678 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 PLEKHA1Q9HB21 404 aa13.33□□□□□ -0.28
SF3A1-201ENST00000215793 PRAMEF12O95522 483 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 CREB1P16220 341 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 MAGP20916 626 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 CHRNA4P43681 627 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ALDH3A2P51648 485 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 PLA2G16P53816 162 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ATXN1P54253 815 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ECT2LQ008S8 904 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 TNFAIP8L1Q8WVP5 186 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 IPCEF1Q8WWN9 437 aaPredicted RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 PIK3R3Q92569 461 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 SLC22A18Q96BI1 424 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 IL12RB2Q99665 862 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 FEM1AQ9BSK4 669 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 COMMD4Q9H0A8 199 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ZDHHC18Q9NUE0 388 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 DNAAF2Q9NVR5 837 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 CPSF4LA6NMK7 179 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 RHPN2P1A8MT19 583 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 RPLP0P05388 317 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 SRPRAP08240 638 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 MRC1P22897 1456 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 RBBP4Q09028 425 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 CARD16Q5EG05 197 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ADGRF1Q5T601 910 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 SLC30A6Q6NXT4 461 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 FAM156AQ8NDB6 213 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 FATE1Q969F0 183 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 TMEM209Q96SK2 561 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 PTPN18Q99952 460 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 MED28Q9H204 178 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 COQ10BQ9H8M1 238 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 PTTG2Q9NZH5 202 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 COPS7AQ9UBW8 275 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ILVBLA1L0T0 632 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 PAPSS2O95340 614 aaPredicted RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 H6PDO95479 791 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 PIK3CBP42338 1070 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 AP1S2P56377 157 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 MTPNP58546 118 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 VBP1P61758 197 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 NPY5RQ15761 445 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 MBOAT1Q6ZNC8 495 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms