RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DMTF1Q9Y222 760 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 CA5BQ9Y2D0 317 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 TNPO3Q9Y5L0 923 aaKnown RBP18.02■□□□□ 0.47
CLN3-254ENST00000637050 HS3ST3A1Q9Y663 406 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 COL6A3P12111 3177 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 EBAG9O00559 213 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 E2F3O00716 465 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 UBFD1O14562 309 aaKnown RBP18.01■□□□□ 0.47
CLN3-254ENST00000637050 ZNF195O14628 629 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 TAPBPO15533 448 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 FSBPO95073 299 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 DCNP07585 359 aaKnown RBP18.01■□□□□ 0.47
CLN3-254ENST00000637050 CYP2A7P20853 494 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 NUDT1P36639 197 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 ARFIP2P53365 341 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 CDH13P55290 713 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 AP1S2P56377 157 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 CLCQ05315 142 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 NFATC4Q14934 902 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 C6orf89Q6UWU4 347 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 ZNF771Q7L3S4 317 aaPredicted RBP18.01■□□□□ 0.47
CLN3-254ENST00000637050 MCOLN3Q8TDD5 553 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 BIRC7Q96CA5 298 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 EGFL8Q99944 293 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 TMEM120AQ9BXJ8 343 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 SHCBP1LQ9BZQ2 653 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 TM7SF3Q9NS93 570 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 ASB1Q9Y576 335 aa18.01■□□□□ 0.47
CLN3-254ENST00000637050 PRAMEF26H0Y7S4 382 aa18■□□□□ 0.47
CLN3-254ENST00000637050 H0Y8X5 98 aa18■□□□□ 0.47
CLN3-254ENST00000637050 TOR1BO14657 336 aa18■□□□□ 0.47
CLN3-254ENST00000637050 ANXA5P08758 320 aa18■□□□□ 0.47
CLN3-254ENST00000637050 HIST1H2AGP0C0S8 130 aaPredicted RBP18■□□□□ 0.47
CLN3-254ENST00000637050 HIST1H2ADP20671 130 aa18■□□□□ 0.47
CLN3-254ENST00000637050 PXNP49023 591 aaPredicted RBP18■□□□□ 0.47
CLN3-254ENST00000637050 AQP5P55064 265 aa18■□□□□ 0.47
CLN3-254ENST00000637050 YPEL5P62699 121 aa18■□□□□ 0.47
CLN3-254ENST00000637050 DMPKQ09013 629 aa18■□□□□ 0.47
CLN3-254ENST00000637050 C18orf21Q32NC0 220 aaPredicted RBP18■□□□□ 0.47
CLN3-254ENST00000637050 PYCR3Q53H96 274 aa18■□□□□ 0.47
CLN3-254ENST00000637050 METTL2BQ6P1Q9 378 aaKnown RBP18■□□□□ 0.47
CLN3-254ENST00000637050 MAVSQ7Z434 540 aa18■□□□□ 0.47
CLN3-254ENST00000637050 CUZD1Q86UP6 607 aa18■□□□□ 0.47
CLN3-254ENST00000637050 FAM160A2Q8N612 972 aaPredicted RBP18■□□□□ 0.47
CLN3-254ENST00000637050 ESAMQ96AP7 390 aa18■□□□□ 0.47
CLN3-254ENST00000637050 HIST1H2AHQ96KK5 128 aa18■□□□□ 0.47
CLN3-254ENST00000637050 RMDN2Q96LZ7 410 aa18■□□□□ 0.47
CLN3-254ENST00000637050 FOPNLQ96NB1 174 aa18■□□□□ 0.47
CLN3-254ENST00000637050 HIST1H2AJQ99878 128 aa18■□□□□ 0.47
CLN3-254ENST00000637050 TMEM79Q9BSE2 394 aa18■□□□□ 0.47
CLN3-254ENST00000637050 TIMM29Q9BSF4 260 aa18■□□□□ 0.47
CLN3-254ENST00000637050 H2AFJQ9BTM1 129 aa18■□□□□ 0.47
CLN3-254ENST00000637050 OR52A5Q9H2C5 316 aa18■□□□□ 0.47
CLN3-254ENST00000637050 ZBTB26Q9HCK0 441 aa18■□□□□ 0.47
CLN3-254ENST00000637050 ARL15Q9NXU5 204 aa18■□□□□ 0.47
CLN3-254ENST00000637050 EIF2B4Q9UI10 523 aaKnown RBP18■□□□□ 0.47
CLN3-254ENST00000637050 ERICH4A6NGS2 130 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 ARHGEF33A8MVX0 844 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 MATN2O00339 956 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 CATP04040 527 aaKnown RBP17.99■□□□□ 0.47
CLN3-254ENST00000637050 TSPAN8P19075 237 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 ACADLP28330 430 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 CXCL12P48061 93 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 LCP2Q13094 533 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 METRNLQ641Q3 311 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 MAMSTRQ6ZN01 415 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 MBOAT1Q6ZNC8 495 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 ABI3BPQ7Z7G0 1075 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 SPATS2Q86XZ4 545 aaKnown RBP17.99■□□□□ 0.47
CLN3-254ENST00000637050 KIRREL3Q8IZU9 778 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 FBXO15Q8NCQ5 510 aaPredicted RBP17.99■□□□□ 0.47
CLN3-254ENST00000637050 OR56A4Q8NGH8 313 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 CFAP61Q8NHU2 1237 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 AGR3Q8TD06 166 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 FGF22Q9HCT0 170 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 TNFRSF12AQ9NP84 129 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 SUFUQ9UMX1 484 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.99■□□□□ 0.47
CLN3-254ENST00000637050 SLCO1B7G3V0H7 640 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 PPP6CO00743 305 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 KCNJ13O60928 360 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 KELP23276 732 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 GGT5P36269 586 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 SH3BP2P78314 561 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.99■□□□□ 0.47
CLN3-254ENST00000637050 SH2D4BQ5SQS7 431 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 TPRG1LQ5T0D9 272 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 GALNT13Q8IUC8 556 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 TCAIMQ8N3R3 496 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 TRPC4APQ8TEL6 797 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 WDR92Q96MX6 357 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 CD244Q9BZW8 370 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 STN1Q9H668 368 aaKnown RBP17.99■□□□□ 0.47
CLN3-254ENST00000637050 MRPL40Q9NQ50 206 aaKnown RBP17.99■□□□□ 0.47
CLN3-254ENST00000637050 DNAJC28Q9NX36 388 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 WWOXQ9NZC7 414 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 DLGAP2Q9P1A6 1054 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 VTI1BQ9UEU0 232 aa17.99■□□□□ 0.47
CLN3-254ENST00000637050 A0A1W2PPC4 97 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 PRSS38A1L453 326 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms