RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TRIM64A6NGJ6 449 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 OR6C75A6NL08 312 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CLDN25C9JDP6 229 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 H7C4K7 107 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 UGT2B11O75310 529 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ECI2O75521 394 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CLPXO76031 633 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 WDR47O94967 919 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FKBP9O95302 570 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GJB5O95377 273 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZBTB11O95625 1053 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 RPS17P08708 135 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CTSHP09668 335 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MBL2P11226 248 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF7P17097 686 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CAPN3P20807 821 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GRK3P35626 688 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ENTPD1P49961 510 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ARSFP54793 590 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CDKN2DP55273 166 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MAXP61244 160 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CBX3Q13185 183 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GK3PQ14409 553 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PITRM1Q5JRX3 1037 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TTC23LQ6PF05 361 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 IL27RAQ6UWB1 636 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CERS6Q6ZMG9 384 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CYHR1Q6ZMK1 362 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF574Q6ZN55 896 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 Q6ZNX1 250 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MILR1Q7Z6M3 343 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MRPL10Q7Z7H8 261 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 C14orf80Q86SX3 495 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PLD3Q8IV08 490 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM132CQ8N3T6 1108 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 DPP10Q8N608 796 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 STARD8Q92502 1023 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TRIM43Q96BQ3 446 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 BIRC7Q96CA5 298 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FAM120BQ96EK7 910 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SLC47A1Q96FL8 570 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CEP295NLQ96MC4 621 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CLPBQ9H078 707 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 OCEL1Q9H607 264 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FANCEQ9HB96 536 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FBRSL1Q9HCM7 1045 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ATP13A1Q9HD20 1204 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SARS2Q9NP81 518 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 NLE1Q9NVX2 485 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 WWOXQ9NZC7 414 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SCHIP1Q9P0W5 487 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PDE10AQ9Y233 779 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 KIAA1549LQ6ZVL6 1849 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 C1orf232A0A0U1RR37 186 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TEX51A0A1B0GUA7 166 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MYOCOSA0A1B0GUC4 107 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MED19A0JLT2 244 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 NPEPPSL1A6NEC2 478 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 M0QZQ0 153 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HAS3O00219 553 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SLC22A1O15245 554 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MRPS14O60783 128 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PRAMEF11O60813 436 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF623O75123 536 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ATP6V1G1O75348 118 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 IL6P05231 212 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SLC2A4P14672 509 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CSF2RAP15509 400 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 UGT1A6P19224 532 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ITGALP20701 1170 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CD9P21926 228 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 UGT1A1P22309 533 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 UGT1A4P22310 534 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GSTM2P28161 218 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 UGT1A3P35503 534 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 UGT1A5P35504 534 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PTGER3P43115 390 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MAGEA11P43364 429 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ST13P50502 369 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SCNN1BP51168 640 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SH3BP2P78314 561 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MVKQ03426 396 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ACVR1Q04771 509 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ELAVL2Q12926 359 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF177Q13360 481 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CRY1Q16526 586 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 UPP1Q16831 310 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SLC39A12Q504Y0 691 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HMBOX1Q6NT76 420 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ZFAND4Q86XD8 727 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MFSD6LQ8IWD5 586 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ABI1Q8IZP0 508 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SYNPOQ8N3V7 929 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TEX26Q8N6G2 289 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 KLHDC9Q8NEP7 349 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 OR5K1Q8NHB7 308 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SVIPQ8NHG7 77 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 FIG4Q92562 907 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SLCO4A1Q96BD0 722 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms