RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PROKR1Q8TCW9 393 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 LRRN4Q8WUT4 740 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 TEKT4Q8WW24 435 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 ZFPM2Q8WW38 1151 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 HSPH1Q92598 858 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 TTC25Q96NG3 672 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 VPS35Q96QK1 796 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 LMF1Q96S06 567 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 TMEM121Q9BTD3 319 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 REPIN1Q9BWE0 567 aaKnown RBP14.04□□□□□ -0.16
CLN3-249ENST00000636685 PITPNM3Q9BZ71 974 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 DEF6Q9H4E7 631 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 RAD18Q9NS91 495 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 TINAGQ9UJW2 476 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 OR2AG2A6NM03 316 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 BTN3A3O00478 584 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 MATN3O15232 486 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 SLC19A2O60779 497 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 OR2B3O76000 313 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 TCF4P15884 667 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 CASP6P55212 293 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 RBPJQ06330 500 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 DEFB110Q30KQ9 67 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 METRNLQ641Q3 311 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 ACAD10Q6JQN1 1059 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 TMEM220Q6QAJ8 160 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 KIRREL2Q6UWL6 708 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 NCCRP1Q6ZVX7 275 aaPredicted RBP14.03□□□□□ -0.16
CLN3-249ENST00000636685 NRGNQ92686 78 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 MDFIQ99750 246 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 AGPAT1Q99943 283 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 ADGRE3Q9BY15 652 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 GPR63Q9BZJ6 419 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 CLSTN2Q9H4D0 955 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 FAM60AQ9NP50 221 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 BPIFA1Q9NP55 256 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 SLC22A11Q9NSA0 550 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 PARVAQ9NVD7 372 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 TAS2R14Q9NYV8 317 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 ABI3Q9P2A4 366 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 ZNF711Q9Y462 761 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 HS3ST3B1Q9Y662 390 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 AP1M2Q9Y6Q5 423 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 CSPG4Q6UVK1 2322 aa14.03□□□□□ -0.16
CLN3-249ENST00000636685 VPS13CQ709C8 3753 aa14.02□□□□□ -0.16
CLN3-249ENST00000636685 TRAV17A0A0B4J275 112 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 TMEM191CA6NGB0 347 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 BTN3A1O00481 513 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 MFSD11O43934 449 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 DNAJA1P31689 397 aaKnown RBP14.02□□□□□ -0.17
CLN3-249ENST00000636685 TNFSF10P50591 281 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 IST1P53990 364 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 BECN1Q14457 450 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 INAQ16352 499 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 TUBB8Q3ZCM7 444 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 FAM182AQ5T1J6 154 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 LRRC49Q8IUZ0 686 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 ZNF655Q8N720 491 aaPredicted RBP14.02□□□□□ -0.17
CLN3-249ENST00000636685 BEND7Q8N7W2 519 aaPredicted RBP14.02□□□□□ -0.17
CLN3-249ENST00000636685 BRSK1Q8TDC3 778 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 N4BP2L2Q92802 583 aaPredicted RBP14.02□□□□□ -0.17
CLN3-249ENST00000636685 TREX2Q9BQ50 279 aaPredicted RBP14.02□□□□□ -0.17
CLN3-249ENST00000636685 SRMSQ9H3Y6 488 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.02□□□□□ -0.17
CLN3-249ENST00000636685 TXLNGQ9NUQ3 528 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 FAM8A1Q9UBU6 413 aa14.02□□□□□ -0.17
CLN3-249ENST00000636685 MATN2O00339 956 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 MT-CYBP00156 380 aaPredicted RBP14.01□□□□□ -0.17
CLN3-249ENST00000636685 F10P00742 488 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 PPP2R2AP63151 447 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 TMPRSS15P98073 1019 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 GALNT2Q10471 571 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 KRT33BQ14525 404 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 SHISA6Q6ZSJ9 500 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 FAM20CQ8IXL6 584 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 CHDHQ8NE62 594 aaPredicted RBP14.01□□□□□ -0.17
CLN3-249ENST00000636685 ANKRD20A12PQ8NF67 263 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 LCN9Q8WX39 176 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 NACC2Q96BF6 587 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 RMDN2Q96LZ7 410 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 MESP1Q9BRJ9 268 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 CXXC4Q9H2H0 198 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 MAGEE1Q9HCI5 957 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 PCDH18Q9HCL0 1135 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 TAB2Q9NYJ8 693 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 AMACRQ9UHK6 382 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 HCFC1P51610 2035 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 NSD1Q96L73 2696 aaPredicted RBP14.01□□□□□ -0.17
CLN3-249ENST00000636685 CPAMD8Q8IZJ3 1885 aa14.01□□□□□ -0.17
CLN3-249ENST00000636685 DYTNA2CJ06 578 aa14□□□□□ -0.17
CLN3-249ENST00000636685 TMCO5BA8MYB1 307 aa14□□□□□ -0.17
CLN3-249ENST00000636685 AURKAO14965 403 aa14□□□□□ -0.17
CLN3-249ENST00000636685 ZSCAN9O15535 394 aaPredicted RBP14□□□□□ -0.17
CLN3-249ENST00000636685 GPR39O43194 453 aa14□□□□□ -0.17
CLN3-249ENST00000636685 UGT1A9O60656 530 aa14□□□□□ -0.17
CLN3-249ENST00000636685 CRYABP02511 175 aaKnown RBP14□□□□□ -0.17
CLN3-249ENST00000636685 SLC35G4P0C7Q5 338 aa14□□□□□ -0.17
CLN3-249ENST00000636685 ATP1A3P13637 1013 aa14□□□□□ -0.17
CLN3-249ENST00000636685 UGT1A6P19224 532 aa14□□□□□ -0.17
CLN3-249ENST00000636685 UGT1A1P22309 533 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms