RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TAL1P17542 331 aaPredicted RBP8.78□□□□□ -1
VCL-206ENST00000623461 NPR2P20594 1047 aa8.78□□□□□ -1
VCL-206ENST00000623461 ITGA3P26006 1051 aa8.78□□□□□ -1
VCL-206ENST00000623461 SEMA3AQ14563 771 aa8.78□□□□□ -1
VCL-206ENST00000623461 HAGHLQ6PII5 290 aaPredicted RBP8.78□□□□□ -1
VCL-206ENST00000623461 UGT2A3Q6UWM9 527 aa8.78□□□□□ -1
VCL-206ENST00000623461 ASB12Q8WXK4 309 aa8.78□□□□□ -1
VCL-206ENST00000623461 GTPBP3Q969Y2 492 aaKnown RBP8.78□□□□□ -1
VCL-206ENST00000623461 MYOZ2Q9NPC6 264 aa8.78□□□□□ -1
VCL-206ENST00000623461 KCTD5Q9NXV2 234 aa8.78□□□□□ -1
VCL-206ENST00000623461 ZNF282Q9UDV7 671 aaPredicted RBP8.78□□□□□ -1
VCL-206ENST00000623461 HSPE1-MOB4S4R3N1 261 aa8.78□□□□□ -1
VCL-206ENST00000623461 ZNF536O15090 1300 aa8.78□□□□□ -1
VCL-206ENST00000623461 BAZ2BQ9UIF8 2168 aaKnown RBP8.77□□□□□ -1
VCL-206ENST00000623461 PRKAG1P54619 331 aa8.77□□□□□ -1
VCL-206ENST00000623461 ABRQ12979 859 aa8.77□□□□□ -1
VCL-206ENST00000623461 WDR45BQ5MNZ6 344 aa8.77□□□□□ -1
VCL-206ENST00000623461 SH3PXD2AQ5TCZ1 1133 aa8.77□□□□□ -1
VCL-206ENST00000623461 TMEM236Q5W0B7 351 aa8.77□□□□□ -1
VCL-206ENST00000623461 RHBDF2Q6PJF5 856 aa8.77□□□□□ -1
VCL-206ENST00000623461 KBTBD6Q86V97 674 aa8.77□□□□□ -1
VCL-206ENST00000623461 VSIG10LQ86VR7 867 aa8.77□□□□□ -1
VCL-206ENST00000623461 TBC1D17Q9HA65 648 aa8.77□□□□□ -1
VCL-206ENST00000623461 TM9SF3Q9HD45 589 aa8.77□□□□□ -1
VCL-206ENST00000623461 C11orf16Q9NQ32 467 aa8.77□□□□□ -1
VCL-206ENST00000623461 CLEC4AQ9UMR7 237 aa8.77□□□□□ -1
VCL-206ENST00000623461 PCDHA2Q9Y5H9 948 aa8.77□□□□□ -1
VCL-206ENST00000623461 SPIN1Q9Y657 262 aaPredicted RBP8.77□□□□□ -1
VCL-206ENST00000623461 MEGF6O75095 1541 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 FGF3P11487 239 aaPredicted RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 ZNF24P17028 368 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 RPL4P36578 427 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 HSPA14Q0VDF9 509 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 CERS6Q6ZMG9 384 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 C15orf52Q6ZUT6 534 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 ADGRD2Q7Z7M1 963 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 INO80EQ8NBZ0 244 aaPredicted RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 DNAJA4Q8WW22 397 aaPredicted RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 MRPS31Q92665 395 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 SENP8Q96LD8 212 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 HYLS1Q96M11 299 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 CKLFQ9UBR5 152 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 MALT1Q9UDY8 824 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 YDJCA8MPS7 323 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 OR4F21O95013 312 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 HLA-DQA2P01906 255 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 TAS2R39P59534 338 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 RPL6Q02878 288 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 SNAPC2Q13487 334 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ANKRD26P1Q6NSI1 321 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 LINGO2Q7L985 606 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 TMEM199Q8N511 208 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 APOLD1Q96LR9 279 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ANKRD60Q9BZ19 345 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 RC3H2Q9HBD1 1191 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 ARHGEF4Q9NR80 690 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 MYPNQ86TC9 1320 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 DCLK1O15075 740 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 SH3BGRLO75368 114 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 BDNFP23560 247 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ELK4P28324 431 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 AQP1P29972 269 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 MANFP55145 182 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 RPS14P62263 151 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 BIKQ13323 160 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 SPRED3Q2MJR0 410 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 DUS1LQ6P1R4 473 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 OR52J3Q8NH60 311 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 MUS81Q96NY9 551 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ELP3Q9H9T3 547 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 SMURF2Q9HAU4 748 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 POLE4Q9NR33 117 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 COL20A1Q9P218 1284 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 MAP10Q9P2G4 905 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ANKMY1Q9P2S6 941 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 INMT-MINDY4F8WBC2 141 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 RP2O75695 350 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 RNASEH2AO75792 299 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 SNHG28P0DPA3 235 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ICAM3P32942 547 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ELAVL2Q12926 359 aaKnown RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 DOK6Q6PKX4 331 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 TMEM192Q8IY95 271 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 TOP6BLQ8N6T0 577 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 GPR156Q8NFN8 814 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 PIGXQ8TBF5 258 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 PRMT6Q96LA8 375 aaPredicted RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 CORO1BQ9BR76 489 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 SLC25A51Q9H1U9 297 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 ADAM7Q9H2U9 754 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 IFT52Q9Y366 437 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 H3BM21 787 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 GABRDO14764 452 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 STK16O75716 305 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 PRKACAP17612 351 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 TLX1P31314 330 aaPredicted RBP8.77□□□□□ -1.01
VCL-206ENST00000623461 PPP3R1P63098 170 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 SKP1P63208 163 aa8.77□□□□□ -1.01
VCL-206ENST00000623461 FAM174BQ3ZCQ3 159 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms