RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 UBE2QL1A1L167 161 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 TNFRSF11BO00300 401 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 KERAO60938 352 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 UGT2B11O75310 529 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 UNC5CO95185 931 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 NR2F6P10588 404 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 GRK6P43250 576 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 NRLP54845 237 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 ARHGAP40Q5TG30 622 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 REP15Q6BDI9 236 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 SPPL2CQ8IUH8 684 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 SLC34A3Q8N130 599 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 GJD3Q8N144 294 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 TSPAN14Q8NG11 270 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 OR2AJ1Q8NGZ0 328 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 MIPEPQ99797 713 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 NKX2-4Q9H2Z4 354 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 SLCO1B3Q9NPD5 702 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 CYP8B1Q9UNU6 501 aa11.2□□□□□ -0.62
CLIP1-219ENST00000620786 ELOVL7A1L3X0 281 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SLC10A3P09131 477 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 EFNA1P20827 205 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 MYOM1P52179 1685 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 CHN2P52757 468 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 EIPR1Q53HC9 387 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ANKRD46Q86W74 232 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 KBTBD8Q8NFY9 601 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 RASSF5Q8WWW0 418 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SLC38A4Q969I6 547 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 NTAN1Q96AB6 310 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 C8orf48Q96LL4 319 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 CCDC28BQ9BUN5 200 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 IL23AQ9NPF7 189 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 GPC6Q9Y625 555 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 HS3ST4Q9Y661 456 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 CCDC162PA2VCL2 907 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SNAI1O95863 264 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 F2P00734 622 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 HLA-EP13747 358 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 HOXB6P17509 224 aaKnown RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 KCNJ5P48544 419 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 DPYSL2Q16555 572 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 GPR33Q49SQ1 333 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 NCSTNQ92542 709 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ZNF516Q92618 1163 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 HBEGFQ99075 208 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 RGS17Q9UGC6 210 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SATB2Q9UPW6 733 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 MTMR11A4FU01 709 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 MAGEB17A8MXT2 336 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 JMJD7P0C870 316 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ANPEPP15144 967 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 CSF2RAP15509 400 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ACVRL1P37023 503 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 FASTKD3Q14CZ7 662 aaKnown RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 PRAMEF14Q5SWL7 426 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 PRAMEF13Q5VWM6 474 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 HGSNATQ68CP4 663 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 LYSMD3Q7Z3D4 306 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SFXN1Q9H9B4 322 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 PRR5-ARHGAP8B1AHC4 643 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 GNB5O14775 395 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 PRODHO43272 600 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 TCEA3O75764 348 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ARHGAP8P85298 464 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 CHRNA6Q15825 494 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 COLEC12Q5KU26 742 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 LIN54Q6MZP7 749 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 C11orf65Q8NCR3 313 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 OR52J3Q8NH60 311 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 TP53INP1Q96A56 240 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ESAMQ96AP7 390 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ZBED6CLQ96FA7 236 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 MCUBQ9NWR8 336 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 REXO2Q9Y3B8 237 aaKnown RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 PIP5K1BO14986 540 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 TPST2O60704 377 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 PIGRP01833 764 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ALPPP05187 535 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 PRPS2P11908 318 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 ATP1B2P14415 290 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-219ENST00000620786 IL7RP16871 459 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 BDKRB1P46663 353 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SEPHS1P49903 392 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SIRPB2Q5JXA9 342 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 MBOAT1Q6ZNC8 495 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 RASSF6Q6ZTQ3 369 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 IRF2BP1Q8IU81 584 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 MPP5Q8N3R9 675 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 SNX33Q8WV41 574 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 AP3S1Q92572 193 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 HIST1H2AAQ96QV6 131 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 FCRL5Q96RD9 977 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 P2RY13Q9BPV8 354 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 LRMDAQ9H2I8 198 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 TMEM98Q9Y2Y6 226 aa11.19□□□□□ -0.62
CLIP1-219ENST00000620786 RBM47A0AV96 593 aaKnown RBP11.18□□□□□ -0.62
CLIP1-219ENST00000620786 BTN3A2P78410 334 aa11.18□□□□□ -0.62
CLIP1-219ENST00000620786 ELF3P78545 371 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms