RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 RALGAPA1Q6GYQ0 2036 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 LNP1A1A4G5 178 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 GFYI3L273 518 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 IFRD1O00458 451 aaPredicted RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 PCDHGA12O60330 932 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 EML2O95834 649 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 BRAFP15056 766 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 CD1DP15813 335 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 CRHR1P34998 444 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 ATXN3P54252 364 aaPredicted RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 SPEM2Q0P670 501 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 DLG1Q12959 904 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 ABRQ12979 859 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 CLCA4Q14CN2 919 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 SEPT7Q16181 437 aaKnown RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 TSNAXIP1Q2TAA8 658 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 IYDQ6PHW0 289 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 PIWIL4Q7Z3Z4 852 aaKnown RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 RASGRP3Q8IV61 690 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 C4orf33Q8N1A6 199 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 PLD6Q8N2A8 252 aaKnown RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 SPATA6LQ8N4H0 392 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 MINDY1Q8N5J2 469 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 SPDYE1Q8NFV5 336 aaPredicted RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 KCTD4Q8WVF5 259 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 SKA2Q8WVK7 121 aaPredicted RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 ASB11Q8WXH4 323 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 TFGQ92734 400 aaPredicted RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 NXNL1Q96CM4 212 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 ATP6V1G3Q96LB4 118 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 TSNARE1Q96NA8 513 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 FOPNLQ96NB1 174 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 GPR78Q96P69 363 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 SMC6Q96SB8 1091 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 SSU72Q9NP77 194 aaKnown RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 DNAAF2Q9NVR5 837 aaKnown RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 MKS1Q9NXB0 559 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 PSMD13Q9UNM6 376 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 NOVA2Q9UNW9 492 aaKnown RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 RUVBL2Q9Y230 463 aaKnown RBP14.02□□□□□ -0.17
UPF1-211ENST00000600868 PCDHGB2Q9Y5G2 931 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 HEBP2Q9Y5Z4 205 aa14.02□□□□□ -0.17
UPF1-211ENST00000600868 KIR2DS5A0A0G2JLQ3 304 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 A0A0G2JNG1 304 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 KIR2DS3K7RE56 304 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 SLC16A5O15375 505 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 FOXD2O60548 495 aaPredicted RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 GLRA3O75311 464 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 PSIP1O75475 530 aaKnown RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 SYF2O95926 243 aaKnown RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 C8GP07360 202 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 CCT5P48643 541 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 KPNA2P52292 529 aaKnown RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 IL9RQ01113 521 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 SP140Q13342 867 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 KIR2DS5Q14953 304 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 ACAP2Q15057 778 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 SF3A2Q15428 464 aaKnown RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 RPE65Q16518 533 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 KLC3Q6P597 504 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 OGFOD3Q6PK18 319 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 UNC5DQ6UXZ4 953 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 NAGSQ8N159 534 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 BANPQ8N9N5 519 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 OR2I1PQ8NGU4 316 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 ZDHHC1Q8WTX9 485 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 KIAA1191Q96A73 305 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 APOPT1Q96IL0 206 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 C12orf66Q96MD2 445 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 INSM2Q96T92 566 aaPredicted RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 DUSP23Q9BVJ7 150 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 TFB2MQ9H5Q4 396 aaKnown RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 NLGN3Q9NZ94 848 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 SCHIP1Q9P0W5 487 aaPredicted RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 TSR3Q9UJK0 312 aaKnown RBP14.01□□□□□ -0.17
UPF1-211ENST00000600868 IKZF3Q9UKT9 509 aa14.01□□□□□ -0.17
UPF1-211ENST00000600868 USP34Q70CQ2 3546 aa14□□□□□ -0.17
UPF1-211ENST00000600868 HMGB1P1B2RPK0 211 aaPredicted RBP14□□□□□ -0.17
UPF1-211ENST00000600868 CDC7O00311 574 aa14□□□□□ -0.17
UPF1-211ENST00000600868 COPEO14579 308 aa14□□□□□ -0.17
UPF1-211ENST00000600868 ZBTB14O43829 449 aa14□□□□□ -0.17
UPF1-211ENST00000600868 C1orf105O95561 183 aa14□□□□□ -0.17
UPF1-211ENST00000600868 TOP3BO95985 862 aaKnown RBP14□□□□□ -0.17
UPF1-211ENST00000600868 RPN2P04844 631 aa14□□□□□ -0.17
UPF1-211ENST00000600868 RBP1P09455 135 aa14□□□□□ -0.17
UPF1-211ENST00000600868 GIMD1P0DJR0 217 aa14□□□□□ -0.17
UPF1-211ENST00000600868 MTHFD1P11586 935 aaKnown RBP14□□□□□ -0.17
UPF1-211ENST00000600868 CREB1P16220 341 aa14□□□□□ -0.17
UPF1-211ENST00000600868 XRCC1P18887 633 aaPredicted RBP14□□□□□ -0.17
UPF1-211ENST00000600868 TFEBP19484 476 aa14□□□□□ -0.17
UPF1-211ENST00000600868 TGM1P22735 817 aa14□□□□□ -0.17
UPF1-211ENST00000600868 MAGOHP61326 146 aaKnown RBP14□□□□□ -0.17
UPF1-211ENST00000600868 DEFB133Q30KQ1 61 aa14□□□□□ -0.17
UPF1-211ENST00000600868 TTMPQ5BVD1 217 aa14□□□□□ -0.17
UPF1-211ENST00000600868 ADAMTSL2Q86TH1 951 aa14□□□□□ -0.17
UPF1-211ENST00000600868 ISCA2Q86U28 154 aa14□□□□□ -0.17
UPF1-211ENST00000600868 C17orf82Q86X59 251 aaPredicted RBP14□□□□□ -0.17
UPF1-211ENST00000600868 GATAD2AQ86YP4 633 aa14□□□□□ -0.17
UPF1-211ENST00000600868 TBC1D21Q8IYX1 336 aa14□□□□□ -0.17
UPF1-211ENST00000600868 SFRP1Q8N474 314 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms