RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 LRRC40Q9H9A6 602 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 ACSS2Q9NR19 701 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 NLE1Q9NVX2 485 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 MACROD2A1Z1Q3 448 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 SOWAHDA6NJG2 315 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 ERI2A8K979 691 aaKnown RBP13.22□□□□□ -0.29
TRIM28-211ENST00000597968 C2orf74A8MZ97 194 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 MIF4GDA9UHW6 222 aaKnown RBP13.22□□□□□ -0.29
TRIM28-211ENST00000597968 CEACAM4O75871 244 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 IGHEP01854 428 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 POLR2CP19387 275 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-211ENST00000597968 MC4RP32245 332 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 RORAP35398 523 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 NSG1P42857 185 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 PREPP48147 710 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 PGDP52209 483 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 RRADP55042 308 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 CACNG1Q06432 222 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 GPS2Q13227 327 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 ITIH4Q14624 930 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 PTPRCAPQ14761 206 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 IGFBP7Q16270 282 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 PLEKHS1Q5SXH7 462 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 KCTD11Q693B1 232 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 MED25Q71SY5 747 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 LINC00523Q86TU6 105 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 AMIGO1Q86WK6 493 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 SYCE1Q8N0S2 351 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 UBL4BQ8N7F7 174 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 GALNT11Q8NCW6 608 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 OR4E2Q8NGC2 313 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 ADAMTS17Q8TE56 1095 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 MRFAP1L1Q96HT8 127 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 FERD3LQ96RJ6 166 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 SLC25A23Q9BV35 468 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 ING2Q9H160 280 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 C10orf88Q9H8K7 445 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 POLG2Q9UHN1 485 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 TCFL5Q9UL49 500 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 SNX7Q9UNH6 387 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 PADI2Q9Y2J8 665 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 ZNF451Q9Y4E5 1061 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 AP1M2Q9Y6Q5 423 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 DUSP10Q9Y6W6 482 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 HECTD1Q9ULT8 2610 aa13.22□□□□□ -0.29
TRIM28-211ENST00000597968 SLC9B1P1A6NJY1 282 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 E7EQ34 232 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 VPS4BO75351 444 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 POLBP06746 335 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 GP1BBP13224 206 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 AGXTP21549 392 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 VAV2P52735 878 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 NAP1L1P55209 391 aaKnown RBP13.21□□□□□ -0.29
TRIM28-211ENST00000597968 BOP1Q14137 746 aaKnown RBP13.21□□□□□ -0.29
TRIM28-211ENST00000597968 GPR19Q15760 415 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 LYPLAL1Q5VWZ2 237 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 DUS1LQ6P1R4 473 aaKnown RBP13.21□□□□□ -0.29
TRIM28-211ENST00000597968 FAM199XQ6PEV8 388 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-211ENST00000597968 PACS1Q6VY07 963 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 ARHGEF18Q6ZSZ5 1173 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 GAS2L3Q86XJ1 694 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 GPR135Q8IZ08 494 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 EFCAB3Q8N7B9 438 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 SLC38A9Q8NBW4 561 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 OR52E1Q8NGJ3 308 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 CCDC110Q8TBZ0 833 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 TFGQ92734 400 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-211ENST00000597968 NACC2Q96BF6 587 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 ALS2CR12Q96Q35 445 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 TTC1Q99614 292 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 CHST8Q9H2A9 424 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 ACTR5Q9H9F9 607 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-211ENST00000597968 AKIRIN1Q9H9L7 192 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-211ENST00000597968 OR6C2Q9NZP2 312 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 RIMKLBQ9ULI2 386 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 VPS4AQ9UN37 437 aa13.21□□□□□ -0.29
TRIM28-211ENST00000597968 MAST4O15021 2626 aa13.21□□□□□ -0.3
TRIM28-211ENST00000597968 GSAPA4D1B5 854 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 C9J4A7 227 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 DPM1O60762 260 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 AP2A1O95782 977 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 FTH1P02794 183 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 CYP2A7P20853 494 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 STIP1P31948 543 aaKnown RBP13.2□□□□□ -0.3
TRIM28-211ENST00000597968 SHMT2P34897 504 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 ITGA1P56199 1179 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 ZNF789Q5FWF6 425 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 RAD9BQ6WBX8 426 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 CERS6Q6ZMG9 384 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 TMEM135Q86UB9 458 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 HOOK3Q86VS8 718 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 SERPINA9Q86WD7 417 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 SYTL1Q8IYJ3 562 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 TBC1D21Q8IYX1 336 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 LRRC57Q8N9N7 239 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 GLIS1Q8NBF1 620 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 PROKR1Q8TCW9 393 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 DENND1AQ8TEH3 1009 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 PEX13Q92968 403 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 CLIP3Q96DZ5 547 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms