RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SUN2Q9UH99 717 aa11.05□□□□□ -0.64
LIG3-204ENST00000585740 ZNF225Q9UK10 706 aa11.05□□□□□ -0.64
LIG3-204ENST00000585740 ADAMTS6Q9UKP5 1117 aa11.05□□□□□ -0.64
LIG3-204ENST00000585740 PSMD13Q9UNM6 376 aa11.05□□□□□ -0.64
LIG3-204ENST00000585740 PCDHGA7Q9Y5G6 932 aa11.05□□□□□ -0.64
LIG3-204ENST00000585740 GPR45Q9Y5Y3 372 aa11.05□□□□□ -0.64
LIG3-204ENST00000585740 ST14Q9Y5Y6 855 aa11.05□□□□□ -0.64
LIG3-204ENST00000585740 MUC22E2RYF6 1773 aaPredicted RBP11.05□□□□□ -0.64
LIG3-204ENST00000585740 FAM234BA2RU67 622 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 NR5A2O00482 541 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 WNT9AO14904 365 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 RGS14O43566 566 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 SYNCRIPO60506 623 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 NPPAP01160 153 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 GSTM1P09488 218 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 ARSAP15289 507 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 XRCC1P18887 633 aaPredicted RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 PRDX3P30048 256 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 VIPR2P41587 438 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 NRIP1P48552 1158 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 GSTM4Q03013 218 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 EMX2Q04743 252 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 CEACAM7Q14002 265 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 KCNC3Q14003 757 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 PHKG1Q16816 387 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 HNRNPA1L2Q32P51 320 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 FBXO48Q5FWF7 155 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 TCEAL5Q5H9L2 206 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 TRIM68Q6AZZ1 485 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 LETMD1Q6P1Q0 360 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 BLOC1S3Q6QNY0 202 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 IL27RAQ6UWB1 636 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 LIPIQ6XZB0 460 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 PRR23BQ6ZRT6 265 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 RFLNAQ6ZTI6 216 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 PARS2Q7L3T8 475 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 DSG4Q86SJ6 1040 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 GPR149Q86SP6 731 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 FUNDC1Q8IVP5 155 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 MINDY1Q8N5J2 469 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 C12orf76Q8N812 135 aaPredicted RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 CATSPER1Q8NEC5 780 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 OR52B6Q8NGF0 335 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 MCOLN3Q8TDD5 553 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 ASZ1Q8WWH4 475 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 SPDL1Q96EA4 605 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 TMEM79Q9BSE2 394 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 RIOK2Q9BVS4 552 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 ZCCHC2Q9C0B9 1178 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 MUC13Q9H3R2 512 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 BATF3Q9NR55 127 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 TMEM181Q9P2C4 612 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 CD84Q9UIB8 345 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 TSR3Q9UJK0 312 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 LEF1Q9UJU2 399 aaPredicted RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 TMPRSS11EQ9UL52 423 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 PPM1HQ9ULR3 514 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 YBX2Q9Y2T7 364 aaKnown RBP11.04□□□□□ -0.64
LIG3-204ENST00000585740 ASB1Q9Y576 335 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 CHD7Q9P2D1 2997 aa11.04□□□□□ -0.64
LIG3-204ENST00000585740 REV3LO60673 3130 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 LRRK1Q38SD2 2015 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 C15orf38-AP3S2A0A0A6YYH1 394 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 A0A1B0GTL3 188 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 A0A1W2PP18 115 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 E7ENX8 843 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 C1QTNF3-AMACRE9PGA6 284 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 GFYI3L273 518 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 KPNA3O00505 521 aaPredicted RBP11.03□□□□□ -0.64
LIG3-204ENST00000585740 ATG13O75143 517 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 SLC22A3O75751 556 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 KRT6AP02538 564 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 KRT6BP04259 564 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 CD1EP15812 388 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 ETV3P41162 512 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 EIF2DP41214 584 aaKnown RBP11.03□□□□□ -0.64
LIG3-204ENST00000585740 DPP6P42658 865 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 KRT6CP48668 564 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 HSPA14Q0VDF9 509 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 TRIM25Q14258 630 aaKnown RBP11.03□□□□□ -0.64
LIG3-204ENST00000585740 ELAVL3Q14576 367 aaKnown RBP11.03□□□□□ -0.64
LIG3-204ENST00000585740 ACOX1Q15067 660 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 NR6A1Q15406 480 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 GGTA1PQ4G0N0 100 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 LRRC73Q5JTD7 316 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 C6orf136Q5SQH8 315 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 RARS2Q5T160 578 aaKnown RBP11.03□□□□□ -0.64
LIG3-204ENST00000585740 IRAK1BP1Q5VVH5 260 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 NUDT18Q6ZVK8 323 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 Q6ZVL8 140 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 ARPINQ7Z6K5 226 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 NLRP8Q86W28 1048 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 C12orf40Q86WS4 652 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 FAM9CQ8IZT9 166 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 EFCAB3Q8N7B9 438 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 FNDC5Q8NAU1 212 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 OR9I1Q8NGQ6 314 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 NRG4Q8WWG1 115 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 PYDC1Q8WXC3 89 aa11.03□□□□□ -0.64
LIG3-204ENST00000585740 ATL1Q8WXF7 558 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms