RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 COPS8Q99627 209 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 HEMGNQ9BXL5 484 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 TLR10Q9BXR5 811 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 PITPNM3Q9BZ71 974 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 SRMSQ9H3Y6 488 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 TFB2MQ9H5Q4 396 aaKnown RBP10.3□□□□□ -0.76
RFFL-209ENST00000581265 C10orf88Q9H8K7 445 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 FANCEQ9HB96 536 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 ARNT2Q9HBZ2 717 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 SOHLH2Q9NX45 425 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 FKBPLQ9UIM3 349 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 SERTAD3Q9UJW9 196 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 SNX7Q9UNH6 387 aa10.3□□□□□ -0.76
RFFL-209ENST00000581265 IGLV3-16A0A075B6K0 115 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 CCDC66A2RUB6 948 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 AKR1B15C9JRZ8 316 aaPredicted RBP10.29□□□□□ -0.76
RFFL-209ENST00000581265 CFAP99D6REC4 459 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 H7C0C1 242 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 BTN3A3O00478 584 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 MAP3K7O43318 606 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 SEMA7AO75326 666 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 TMEM63AO94886 807 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ATP1B2P14415 290 aaPredicted RBP10.29□□□□□ -0.76
RFFL-209ENST00000581265 CDH3P22223 829 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 HADHAP40939 763 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ATP5OP48047 213 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 PREPP48147 710 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 CD151P48509 253 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ABRQ12979 859 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 OLIG2Q13516 323 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 PRPSAP1Q14558 356 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ANKRD20A2Q5SQ80 823 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ANKRD20A1Q5TYW2 823 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ANKRD20A3Q5VUR7 823 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 DENND5AQ6IQ26 1287 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 C11orf63Q6NUN7 778 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 MED25Q71SY5 747 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ENDOVQ8N8Q3 282 aaKnown RBP10.29□□□□□ -0.76
RFFL-209ENST00000581265 TMEM102Q8N9M5 508 aaPredicted RBP10.29□□□□□ -0.76
RFFL-209ENST00000581265 OR13C4Q8NGS5 318 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 OR1L3Q8NH93 324 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ACTL9Q8TC94 416 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 KRT35Q92764 455 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 CLIP3Q96DZ5 547 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 FERD3LQ96RJ6 166 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 DPH2Q9BQC3 489 aaPredicted RBP10.29□□□□□ -0.76
RFFL-209ENST00000581265 APOL2Q9BQE5 337 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 FERMT1Q9BQL6 677 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 OR52A5Q9H2C5 316 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 MVB12BQ9H7P6 319 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ACTR5Q9H9F9 607 aaPredicted RBP10.29□□□□□ -0.76
RFFL-209ENST00000581265 PCMTD2Q9NV79 361 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 FAM8A1Q9UBU6 413 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 FEZ2Q9UHY8 353 aaPredicted RBP10.29□□□□□ -0.76
RFFL-209ENST00000581265 CRLS1Q9UJA2 301 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 ZNF451Q9Y4E5 1061 aa10.29□□□□□ -0.76
RFFL-209ENST00000581265 TNRC6AQ8NDV7 1962 aaKnown RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 TRBV5-4A0A0C4DH59 114 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 GSAPA4D1B5 854 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 TMEM150CB9EJG8 249 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 IFRD1O00458 451 aaPredicted RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 LDB2O43679 373 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 DPM1O60762 260 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 RBP3P10745 1247 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 ST6GAL1P15907 406 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 ITGALP20701 1170 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 PTMSP20962 102 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 PSMB4P28070 264 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 VAV2P52735 878 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 ZNF140P52738 457 aaPredicted RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 ITGA1P56199 1179 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 OTUD4Q01804 1114 aaKnown RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 RPA4Q13156 261 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 INPP5JQ15735 1006 aaPredicted RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 JMJD6Q6NYC1 403 aaPredicted RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 FAM198BQ6UWH4 519 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 KLHDC8BQ8IXV7 354 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 SYTL1Q8IYJ3 562 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 ZBTB2Q8N680 514 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 GLIS1Q8NBF1 620 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 PHC3Q8NDX5 983 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 FDCSPQ8NFU4 85 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 PPP1R2P1Q96PQ5 205 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 TRAPPC9Q96Q05 1148 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 FAM96AQ9H5X1 160 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 COG4Q9H9E3 785 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 ZDHHC3Q9NYG2 299 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 G3BP2Q9UN86 482 aaKnown RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 PCDHA3Q9Y5H8 950 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 PCDHA13Q9Y5I0 950 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 PRRC2CQ9Y520 2896 aaKnown RBP10.28□□□□□ -0.76
RFFL-209ENST00000581265 SHANK1Q9Y566 2161 aa10.28□□□□□ -0.76
RFFL-209ENST00000581265 HIVEP3Q5T1R4 2406 aa10.27□□□□□ -0.76
RFFL-209ENST00000581265 CACNA1DQ01668 2161 aa10.27□□□□□ -0.77
RFFL-209ENST00000581265 H7C0S8 307 aa10.27□□□□□ -0.77
RFFL-209ENST00000581265 BTN3A1O00481 513 aa10.27□□□□□ -0.77
RFFL-209ENST00000581265 DDX3YO15523 660 aaKnown RBP10.27□□□□□ -0.77
RFFL-209ENST00000581265 KCNN4O15554 427 aa10.27□□□□□ -0.77
RFFL-209ENST00000581265 STK10O94804 968 aaKnown RBP10.27□□□□□ -0.77
RFFL-209ENST00000581265 HBQ1P09105 142 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms