RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ABHD6Q9BV23 337 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 KATNB1Q9BVA0 655 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 RTN4RQ9BZR6 473 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 TRIM2Q9C040 744 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 MMP27Q9H306 513 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 NOL11Q9H8H0 719 aaKnown RBP5.72□□□□□ -1.49
VPS53-219ENST00000576019 MSL2Q9HCI7 577 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 GALNT9Q9HCQ5 603 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 BPIFA1Q9NP55 256 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 GRHL1Q9NZI5 618 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 KLK13Q9UKR3 277 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 FZD4Q9ULV1 537 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 LAMA1P25391 3075 aa5.72□□□□□ -1.49
VPS53-219ENST00000576019 OTOGQ6ZRI0 2925 aa5.71□□□□□ -1.49
VPS53-219ENST00000576019 A0A087WV48 116 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 RSL1D1O76021 490 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 C8AP07357 584 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 IQCF3P0C7M6 154 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 GJA1P17302 382 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 TAL1P17542 331 aaPredicted RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 EPORP19235 508 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 PI3P19957 117 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 PCGF2P35227 344 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 PRPHP41219 470 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 KHKP50053 298 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 ARFIP1P53367 373 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 COPB1P53618 953 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 SNU13P55769 128 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 TAS2R40P59535 323 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 KIAA1024LP59773 190 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 ST8SIA6P61647 398 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 RBPJQ06330 500 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 TCP10Q12799 353 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 SSPNQ14714 243 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 ERCC6LQ2NKX8 1250 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 MAJINQ3KP22 176 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 SPDYE7PQ495Y7 208 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 HSP90AA5PQ58FG0 334 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 RARS2Q5T160 578 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 C15orf39Q6ZRI6 1047 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 MARK2Q7KZI7 788 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 ADCK1Q86TW2 530 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 LDB1Q86U70 411 aaPredicted RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 KLBQ86Z14 1044 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 CADM3Q8N126 398 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 CNNM3Q8NE01 707 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 OR7G3Q8NG95 312 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 OR8K5Q8NH50 307 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 RASSF8Q8NHQ8 419 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 RRNAD1Q96FB5 475 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 ZC3HAV1LQ96H79 300 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 RMDN2Q96LZ7 410 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 GNRHR2Q96P88 292 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 SEPT5Q99719 369 aaPredicted RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 TMEM47Q9BQJ4 181 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 NTPCRQ9BSD7 190 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 GPR87Q9BY21 358 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 SPATC1LQ9H0A9 340 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 UPF3AQ9H1J1 476 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 TUFT1Q9NNX1 390 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 ERAP1Q9NZ08 941 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 CWC15Q9P013 229 aaKnown RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 ZNF624Q9P2J8 865 aaPredicted RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 RABL2AQ9UBK7 228 aaPredicted RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 TRPC4Q9UBN4 977 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 LEF1Q9UJU2 399 aaPredicted RBP5.71□□□□□ -1.5
VPS53-219ENST00000576019 ITGA11Q9UKX5 1188 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 RAB23Q9ULC3 237 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 STX8Q9UNK0 236 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 KIAA1217Q5T5P2 1943 aa5.71□□□□□ -1.5
VPS53-219ENST00000576019 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.7□□□□□ -1.5
VPS53-219ENST00000576019 HSPB2A8KAH6 182 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 VWC2LB2RUY7 222 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 C5orf67F2Z3F1 127 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 DUSP11O75319 330 aaKnown RBP5.7□□□□□ -1.5
VPS53-219ENST00000576019 AKAP3O75969 853 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 SCAF4O95104 1147 aaKnown RBP5.7□□□□□ -1.5
VPS53-219ENST00000576019 TRIM16O95361 564 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 HLA-DQA2P01906 255 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 MMP1P03956 469 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 ENGP17813 658 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 ITIH1P19827 911 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 AZGP1P25311 298 aaKnown RBP5.7□□□□□ -1.5
VPS53-219ENST00000576019 SHMT1P34896 483 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 CTNNB1P35222 781 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 SOAT1P35610 550 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 CYP2J2P51589 502 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 ARSEP51690 589 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 ADORA2A-AS1P86434 159 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 GFPT1Q06210 699 aaPredicted RBP5.7□□□□□ -1.5
VPS53-219ENST00000576019 MFSD13AQ14CX5 517 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 HSPB2Q16082 182 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 C6orf136Q5SQH8 315 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 C12orf60Q5U649 245 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 SHEQ5VZ18 495 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 PLA2G4FQ68DD2 849 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 NAIF1Q69YI7 327 aaPredicted RBP5.7□□□□□ -1.5
VPS53-219ENST00000576019 DHRS7BQ6IAN0 325 aaPredicted RBP5.7□□□□□ -1.5
VPS53-219ENST00000576019 ATG14Q6ZNE5 492 aa5.7□□□□□ -1.5
VPS53-219ENST00000576019 Q6ZRM9 215 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms