RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HIST1H2ADP20671 130 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 MAP4P27816 1152 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 RPIAP49247 311 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 AP1S2P56377 157 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 DMWDQ09019 674 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 SETDB1Q15047 1291 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 UNC50Q53HI1 259 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 TPRG1LQ5T0D9 272 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 WDR5BQ86VZ2 330 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 DCP2Q8IU60 420 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 DEFB119Q8N690 84 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 PDPRQ8NCN5 879 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 CFAP61Q8NHU2 1237 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 ZNF473Q8WTR7 871 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 KLHDC7BQ96G42 594 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 HIST1H2AHQ96KK5 128 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 OR2M4Q96R27 311 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 HIST1H2AJQ99878 128 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 ELAC2Q9BQ52 826 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 H2AFJQ9BTM1 129 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 TRMOQ9BU70 441 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 C20orf27Q9GZN8 174 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 OR52A5Q9H2C5 316 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 ZNF395Q9H8N7 513 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 CARS2Q9HA77 564 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 MRPL40Q9NQ50 206 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 AASDHPPTQ9NRN7 309 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 KLC4Q9NSK0 619 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 KLQ9UEF7 1012 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 PTBP2Q9UKA9 531 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 DNAJC16Q9Y2G8 782 aa13.38□□□□□ -0.27
CCDC40-209ENST00000573474 TNPO3Q9Y5L0 923 aaKnown RBP13.38□□□□□ -0.27
CCDC40-209ENST00000573474 MEI4A8MW99 385 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 LYPLA1O75608 230 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 SUPT7LO94864 414 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 GUCA1CO95843 209 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 ANXA5P08758 320 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 THEGLP0DJG4 465 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 TROVE2P10155 538 aaKnown RBP eCLIP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 TDGF1P13385 188 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 ACADLP28330 430 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 EEF1DP29692 281 aaKnown RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 ARRB2P32121 409 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 FNTBP49356 437 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 SRP54P61011 504 aaKnown RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 ARL13AQ5H913 290 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 ANKS6Q68DC2 871 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 METTL2BQ6P1Q9 378 aaKnown RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 TTC23LQ6PF05 361 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 UNC5DQ6UXZ4 953 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 FRMD7Q6ZUT3 714 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 PIGWQ7Z7B1 504 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 PDZD3Q86UT5 571 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 TCAIMQ8N3R3 496 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 MFSD2AQ8NA29 543 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 FBXO15Q8NCQ5 510 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 RHBDF1Q96CC6 855 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 SLC6A18Q96N87 628 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 SORT1Q99523 831 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 EGFL8Q99944 293 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 C1QTNF3Q9BXJ4 246 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 DUSP15Q9H1R2 295 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 EML4Q9HC35 981 aaKnown RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 GPR27Q9NS67 375 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 ARL15Q9NXU5 204 aa13.37□□□□□ -0.27
CCDC40-209ENST00000573474 EIF2B4Q9UI10 523 aaKnown RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-209ENST00000573474 PRR19A6NJB7 356 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 ARHGEF33A8MVX0 844 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 SNX3O60493 162 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 SIX3O95343 332 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 TNFP01375 233 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 RPS17P08708 135 aaKnown RBP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 BCKDHBP21953 392 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 IDSP22304 550 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 AGTR2P50052 363 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 HNMTP50135 292 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 CLCNKAP51800 687 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 RACK1P63244 317 aaKnown RBP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 GALNT1Q10472 559 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 OVGP1Q12889 678 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 PRKAA1Q13131 559 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 LRP8Q14114 963 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 PCBP2Q15366 365 aaKnown RBP eCLIP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 ALG11Q2TAA5 492 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 GKAP1Q5VSY0 366 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 CGB2Q6NT52 195 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 TSSK4Q6SA08 328 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 RD3Q7Z3Z2 195 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 SPATA21Q7Z572 469 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 IQCHQ86VS3 1027 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 LONP2Q86WA8 852 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 C1orf210Q8IVY1 113 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 LSMEM2Q8N112 164 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 SLC22A18ASQ8N1D0 253 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 UBTD2Q8WUN7 234 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 TSACCQ96A04 125 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-209ENST00000573474 MOCOSQ96EN8 888 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 PDXPQ96GD0 296 aa13.36□□□□□ -0.27
CCDC40-209ENST00000573474 CCDC138Q96M89 665 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms