RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 EML2O95834 649 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 C1QAP02745 245 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 CATP04040 527 aaKnown RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 ITGA2BP08514 1039 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 F7P08709 466 aaPredicted RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 MPC1LP0DKB6 136 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 BRAFP15056 766 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 STMN1P16949 149 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 SAT1P21673 171 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 KCNA4P22459 653 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 ABCG1P45844 678 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 GPLD1P80108 840 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 DNAJC3Q13217 504 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 SLC29A2Q14542 456 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 USP10Q14694 798 aaKnown RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 NR1D2Q14995 579 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 CLCA4Q14CN2 919 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 EFTUD2Q15029 972 aaKnown RBP eCLIP9.84□□□□□ -0.831e-7■■■□□ 15.5
USP3-216ENST00000559873 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 CAPRIN2Q6IMN6 1127 aaKnown RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 GUSBP11Q6P575 273 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 ZNF549Q6P9A3 640 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 ZNF438Q7Z4V0 828 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 CCDC91Q7Z6B0 441 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 DCUN1D3Q8IWE4 304 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 NKAPQ8N5F7 415 aaKnown RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 LILRA3Q8N6C8 439 aaPredicted RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 PHC3Q8NDX5 983 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 OR10G6Q8NH81 332 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 TFGQ92734 400 aaPredicted RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 INSM2Q96T92 566 aaPredicted RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 DPYSL5Q9BPU6 564 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 RAB11FIP5Q9BXF6 653 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 ABCG4Q9H172 646 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 GPAMQ9HCL2 828 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 KCNK4Q9NYG8 393 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 POLG2Q9UHN1 485 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 ZNF180Q9UJW8 692 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 SLC39A10Q9ULF5 831 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 WDR37Q9Y2I8 494 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 DHRS7Q9Y394 339 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 RNF215Q9Y6U7 377 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 ARHGEF17Q96PE2 2063 aaPredicted RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 DNAH14Q0VDD8 3507 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 TRBV23OR9-2A0A075B6M9 112 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 LY6G6EA0A0G2JKS1 128 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 IQANK1A0A1B0GTG1 560 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 CCDC151A5D8V7 595 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 POC1B-GALNT4F8VUJ3 575 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 FTH1P19P0C7X4 201 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 ZNF37AP17032 561 aaPredicted RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 CRABP2P29373 138 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 PDHA2P29803 388 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SLC19A1P41440 591 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 ID4P47928 161 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SERPINB8P50452 374 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 IL2P60568 153 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 RAB10P61026 200 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 IFFO1Q0D2I5 559 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SP140Q13342 867 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 GBX1Q14549 363 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 TAF1BQ53T94 588 aaPredicted RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 CCDC157Q569K6 752 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 NAPRTQ6XQN6 538 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 TMEM26Q6ZUK4 368 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 RAPH1Q70E73 1250 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SPRED1Q7Z699 444 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 CPNE9Q8IYJ1 553 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 TBC1D21Q8IYX1 336 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 ACVR1CQ8NER5 493 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SPDYE1Q8NFV5 336 aaPredicted RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 OR5K2Q8NHB8 316 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 GIMAP7Q8NHV1 300 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SLC44A1Q8WWI5 657 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 RAD51AP1Q96B01 352 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 MTBPQ96DY7 904 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 MRRFQ96E11 262 aaKnown RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 LINGO1Q96FE5 620 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 AHCYL2Q96HN2 611 aaKnown RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 FERD3LQ96RJ6 166 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 CCDC3Q9BQI4 270 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 MCMBPQ9BTE3 642 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 KIR3DX1Q9H7L2 352 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SYNDIG1Q9H7V2 258 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SLC40A1Q9NP59 571 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 ARGLU1Q9NWB6 273 aaPredicted RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 SCHIP1Q9P0W5 487 aaPredicted RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 ZNF624Q9P2J8 865 aaPredicted RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 PSMC3IPQ9P2W1 217 aaPredicted RBP9.83□□□□□ -0.84
USP3-216ENST00000559873 SLC24A2Q9UI40 661 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 CDYLQ9Y232 598 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 MED16Q9Y2X0 877 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 U3KQA8 63 aa9.83□□□□□ -0.84
USP3-216ENST00000559873 SPAARA0A1B0GVQ0 90 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 FAM221BA6H8Z2 402 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 ZNF839A8K0R7 811 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 MATN2O00339 956 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 PPM1DO15297 605 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 TCEA3O75764 348 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 PIAS1O75925 651 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms