RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ARL5AQ9Y689 179 aa8.91□□□□□ -0.98
HDDC3-204ENST00000559834 AP1M2Q9Y6Q5 423 aa8.91□□□□□ -0.98
HDDC3-204ENST00000559834 ZNF106Q9H2Y7 1883 aaKnown RBP8.91□□□□□ -0.98
HDDC3-204ENST00000559834 SPTBN1Q01082 2364 aaKnown RBP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 AGAP14A8MT82 685 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 C2orf74A8MZ97 194 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 PEX12O00623 359 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 SEMA7AO75326 666 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 STK10O94804 968 aaKnown RBP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 LCA5LO95447 670 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 ALPPP05187 535 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 GSTM1P09488 218 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 PRLHRP49683 370 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 ITGA1P56199 1179 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 GSTM4Q03013 218 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 ABRQ12979 859 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 RPA4Q13156 261 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 NCF4Q15080 339 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 EIF2S3LQ2VIR3 472 aaKnown RBP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 GPR33Q49SQ1 333 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 DUS1LQ6P1R4 473 aaKnown RBP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 SNX20Q7Z614 316 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 AMIGO1Q86WK6 493 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 KATNAL2Q8IYT4 538 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 NXPE1Q8N323 547 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 ZBTB2Q8N680 514 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 OR1L3Q8NH93 324 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 HAUS1Q96CS2 278 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 RMDN2Q96LZ7 410 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 PPM1MQ96MI6 270 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 QKIQ96PU8 341 aaKnown RBP eCLIP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 FICDQ9BVA6 458 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 NUDT9Q9BW91 350 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 MFRPQ9BY79 579 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 PCMTD2Q9NV79 361 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 GPN3Q9UHW5 284 aaPredicted RBP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 FEZ2Q9UHY8 353 aaPredicted RBP8.9□□□□□ -0.98
HDDC3-204ENST00000559834 FKBPLQ9UIM3 349 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 MED13Q9UHV7 2174 aa8.9□□□□□ -0.98
HDDC3-204ENST00000559834 hCG_1818297A0A087WSY0 165 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 APOC4-APOC2K7ER74 178 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 BTN3A3O00478 584 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 DDX3YO15523 660 aaKnown RBP8.89□□□□□ -0.99
HDDC3-204ENST00000559834 ZNF749O43361 778 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 SGTAO43765 313 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 ZNF189O75820 626 aaPredicted RBP8.89□□□□□ -0.99
HDDC3-204ENST00000559834 IPO13O94829 963 aaKnown RBP8.89□□□□□ -0.99
HDDC3-204ENST00000559834 APOC2P02655 101 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 CAPN1P07384 714 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 ST6GAL1P15907 406 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 CTNNA2P26232 953 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 RBL1P28749 1068 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 MAGEA1P43355 309 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 HADHBP55084 474 aaKnown RBP8.89□□□□□ -0.99
HDDC3-204ENST00000559834 COPS2P61201 443 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 XIAPP98170 497 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 KYNUQ16719 465 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 PTCHD3Q3KNS1 767 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 VWA5B1Q5TIE3 1220 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 LYPLAL1Q5VWZ2 237 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 SLC6A19Q695T7 634 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 FAM198BQ6UWH4 519 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 BBS12Q6ZW61 710 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 DAAM2Q86T65 1068 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 CNGA4Q8IV77 575 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 IQCKQ8N0W5 287 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 RBMXL3Q8N7X1 1067 aaKnown RBP8.89□□□□□ -0.99
HDDC3-204ENST00000559834 CLEC1AQ8NC01 280 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 PHC3Q8NDX5 983 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 TM9SF4Q92544 642 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 TFGQ92734 400 aaPredicted RBP8.89□□□□□ -0.99
HDDC3-204ENST00000559834 TCTN2Q96GX1 697 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 TRAPPC9Q96Q05 1148 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 PITPNM3Q9BZ71 974 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 GBA3Q9H227 469 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 COG4Q9H9E3 785 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 ZDHHC3Q9NYG2 299 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 ACTR10Q9NZ32 417 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 LUZP4Q9P127 313 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 B3GNT3Q9Y2A9 372 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 EFR3BQ9Y2G0 817 aa8.89□□□□□ -0.99
HDDC3-204ENST00000559834 USP9YO00507 2555 aaPredicted RBP8.89□□□□□ -0.99
HDDC3-204ENST00000559834 TNRC6AQ8NDV7 1962 aaKnown RBP8.88□□□□□ -0.99
HDDC3-204ENST00000559834 BTN3A1O00481 513 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 LDB2O43679 373 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 KDM1AO60341 852 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 MFAP3LO75121 409 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 OR2B3O76000 313 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 SPTBP11277 2137 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 OTX2P32243 289 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 ADRA1AP35348 466 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 CETN2P41208 172 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 LMAN1P49257 510 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 DCDP81605 110 aaKnown RBP8.88□□□□□ -0.99
HDDC3-204ENST00000559834 TMPRSS15P98073 1019 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 PLOD1Q02809 727 aaPredicted RBP8.88□□□□□ -0.99
HDDC3-204ENST00000559834 PRKG2Q13237 762 aa8.88□□□□□ -0.99
HDDC3-204ENST00000559834 MRPL49Q13405 166 aaKnown RBP8.88□□□□□ -0.99
HDDC3-204ENST00000559834 ATP1A4Q13733 1029 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms