RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FERD3LQ96RJ6 166 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 DHRS4Q9BTZ2 278 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 WWP1Q9H0M0 922 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 OR52A5Q9H2C5 316 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 TRIT1Q9H3H1 467 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 NMRAL1Q9HBL8 299 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 GPAMQ9HCL2 828 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 PRDM8Q9NQV8 689 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 POT1Q9NUX5 634 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 UCKL1Q9NWZ5 548 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 FTSJ1Q9UET6 329 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 TBC1D29Q9UFV1 150 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 CDV3Q9UKY7 258 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 PCYT1BQ9Y5K3 369 aaPredicted RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 CNOT1A5YKK6 2376 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 HEATR5BQ9P2D3 2071 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 RHPN2P1A8MT19 583 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 B4DGG1 531 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 TRIM49D1C9J1S8 452 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 SLC16A5O15375 505 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 SIGLEC6O43699 453 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CATP04040 527 aaKnown RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 C8GP07360 202 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CELA2BP08218 269 aaPredicted RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 HIST1H2AGP0C0S8 130 aaPredicted RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 MTHFD1P11586 935 aaKnown RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 CDK4P11802 303 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 PNLIPP16233 465 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 GLB1P16278 677 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 HIST1H2ADP20671 130 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CYP2A7P20853 494 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 ABCG1P45844 678 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 PREPP48147 710 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CDKN2DP55273 166 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 ATP6V0D1P61421 351 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 ABRQ12979 859 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 GBX1Q14549 363 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CASP8Q14790 479 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 TCEA2Q15560 299 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 SEPT7Q16181 437 aaKnown RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 RPE65Q16518 533 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 FAM83EQ2M2I3 478 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 KRT71Q3SY84 523 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 ZNF658BQ4V348 819 aaPredicted RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 ACSBG2Q5FVE4 666 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 KLC3Q6P597 504 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 KLHL35Q6PF15 583 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 FAM83HQ6ZRV2 1179 aaPredicted RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 LCA5Q86VQ0 697 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 NAXDQ8IW45 347 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CPNE9Q8IYJ1 553 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 TBC1D21Q8IYX1 336 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 IQCKQ8N0W5 287 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 NAGSQ8N159 534 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 GPR156Q8NFN8 814 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 OR2I1PQ8NGU4 316 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 MCOLN3Q8TDD5 553 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 NAT14Q8WUY8 206 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 RAD51AP1Q96B01 352 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 FAM136AQ96C01 138 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 LINGO1Q96FE5 620 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 HIST1H2AHQ96KK5 128 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 APOLD1Q96LR9 279 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 INSM2Q96T92 566 aaPredicted RBP9.02□□□□□ -0.97
LDLR-210ENST00000559340 HIST1H2AJQ99878 128 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 RTKNQ9BST9 563 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 H2AFJQ9BTM1 129 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 EPB41L1Q9H4G0 881 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 VIPAS39Q9H9C1 493 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 UCK1Q9HA47 277 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 SNX15Q9NRS6 342 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 SIRPGQ9P1W8 387 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CPNE7Q9UBL6 633 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 PADI4Q9UM07 663 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 PSMD13Q9UNM6 376 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 ASF1AQ9Y294 204 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 CEP250Q9BV73 2442 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 ZNF292O60281 2723 aa9.02□□□□□ -0.97
LDLR-210ENST00000559340 TRBV23OR9-2A0A075B6M9 112 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 A0A096LPK6 155 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 A6NCN8 305 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SMIM23A6NLE4 172 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ZNF839A8K0R7 811 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 RGS16O15492 202 aaPredicted RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 NUDT21O43809 227 aaKnown RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 OPA1O60313 960 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 NOBOXO60393 691 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 MATN4O95460 622 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SHBGP04278 402 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 C2P06681 752 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 F7P08709 466 aaPredicted RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 LTA4HP09960 611 aaKnown RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 CD59P13987 128 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ZNF37AP17032 561 aaPredicted RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 CKMT2P17540 419 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ACADLP28330 430 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 PDHA2P29803 388 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 HSD17B2P37059 387 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SLC19A1P41440 591 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms