RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 MRPS18AQ9NVS2 196 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 LHX3Q9UBR4 397 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 TRIM10Q9UDY6 481 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 ANAPC7Q9UJX3 599 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 CDYLQ9Y232 598 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 HS3ST2Q9Y278 367 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 SPEGQ15772 3267 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 MYLKQ15746 1914 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 AKAP13Q12802 2813 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 KNTC1P50748 2209 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 RP1P56715 2156 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 PTPRBP23467 1997 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GAGE12BA1L429 117 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GAGE12HA6NDE8 117 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 POM121BA6NF01 834 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 IGLON5A6NGN9 336 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 UNC119BA6NIH7 251 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 C3orf70A6NLC5 250 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 C16orf96A6NNT2 1141 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 AKR1B15C9JRZ8 316 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 DFFAO00273 331 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 EEF2KO00418 725 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 BCAT2O15382 392 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZNF217O75362 1048 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 TMCC1O94876 653 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 PROSCO94903 275 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 KCNK5O95279 499 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 MOCS3O95396 460 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GPANK1O95872 356 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 UGT2B4P06133 528 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 PDHA1P08559 390 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 H2AFZP0C0S5 128 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 KRT10P13645 584 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GM2AP17900 193 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 KDELR1P24390 212 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 MAGEA1P43355 309 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 SERPINH1P50454 418 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 CCNHP51946 323 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZNF135P52742 658 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 ADPRHP54922 357 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 CDH6P55285 790 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 TPI1P60174 286 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GBE1Q04446 702 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 NIPAL4Q0D2K0 466 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GRIK2Q13002 908 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 SLC12A1Q13621 1099 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 DPYSL3Q14195 570 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GALEQ14376 348 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GBX1Q14549 363 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ELF2Q15723 593 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 SLC18A3Q16572 532 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 DUOXA1Q1HG43 343 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 KIF26BQ2KJY2 2108 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 HLA-BQ31612 363 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ARL13BQ3SXY8 428 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 PREPLQ4J6C6 727 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 CRB2Q5IJ48 1285 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZNF776Q68DI1 518 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 KIAA0895LQ68EN5 471 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 SARM1Q6SZW1 724 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 RFX8Q6ZV50 586 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 H2AFVQ71UI9 128 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 PARS2Q7L3T8 475 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZNF354CQ86Y25 554 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 PDSS2Q86YH6 399 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 CCDC117Q8IWD4 279 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 Q8N1X5 172 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 UMODL1-AS1Q8N2C9 162 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 RYBPQ8N488 228 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 MINDY1Q8N5J2 469 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 RTL3Q8N8U3 475 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 MSANTD4Q8NCY6 345 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ACRBPQ8NEB7 543 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 CCDC26Q8TAB7 109 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZNF564Q8TBZ8 553 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 FAM71BQ8TC56 605 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZNF483Q8TF39 744 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 KRT35Q92764 455 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 SCAMP4Q969E2 229 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 FAM131CQ96AQ9 280 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 NACC2Q96BF6 587 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 MTFMTQ96DP5 389 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 CSPG4P5Q96PW8 444 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 KLF6Q99612 283 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 HEPHQ9BQS7 1158 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 EDEM2Q9BV94 578 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 TRIM62Q9BVG3 475 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 KRTAP9-3Q9BYQ3 159 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 BTBD1Q9H0C5 482 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 MAGEH1Q9H213 219 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 TCEAL2Q9H3H9 227 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZDHHC6Q9H6R6 413 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 GAREM1Q9H706 876 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 ZMAT3Q9HA38 289 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 SARS2Q9NP81 518 aaKnown RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.26□□□□□ -1.73
SPG11-211ENST00000558561 CTTNBP2NLQ9P2B4 639 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 IL36AQ9UHA7 158 aa4.26□□□□□ -1.73
SPG11-211ENST00000558561 SLC25A13Q9UJS0 675 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms