RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TRA2AQ13595 282 aaKnown RBP eCLIP12.3□□□□□ -0.44
SHMT2-230ENST00000557427 CAPN12Q6ZSI9 719 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 RFLNAQ6ZTI6 216 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 USP45Q70EL2 814 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 IGDCC3Q8IVU1 814 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 NRSN1Q8IZ57 195 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 CBARPQ8N350 705 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-230ENST00000557427 CNTD1Q8N815 330 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 OR4D9Q8NGE8 314 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 FATE1Q969F0 183 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 HDAC11Q96DB2 347 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 NUS1Q96E22 293 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 SGSM3Q96HU1 749 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 AGAP3Q96P47 875 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 ZNF317Q96PQ6 595 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-230ENST00000557427 PAFAH2Q99487 392 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 EFHD1Q9BUP0 239 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 TRABDQ9H4I3 376 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 CYP4F12Q9HCS2 524 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 FGF22Q9HCT0 170 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 HAUS2Q9NVX0 235 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 RSPH14Q9UHP6 348 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 A0A0J9YYE9 177 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 TCRBV9S1A1TA0A576 114 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 DNAJB5O75953 348 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 PRLP01236 227 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 TRBC1P01850 177 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 CREB1P16220 341 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 DRD4P21917 467 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 CSTF2P33240 577 aaKnown RBP eCLIP12.29□□□□□ -0.44
SHMT2-230ENST00000557427 TRIM23P36406 574 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 MSH2P43246 934 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 MC1RQ01726 317 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 PTSQ03393 145 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 CLPPQ16740 277 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-230ENST00000557427 LRRC66Q68CR7 880 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 MICALCLQ6ZW33 695 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 CYS1Q717R9 158 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 FAM129CQ86XR2 697 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 AGGF1Q8N302 714 aaeCLIP12.29□□□□□ -0.44
SHMT2-230ENST00000557427 LPCAT1Q8NF37 534 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 OR56A4Q8NGH8 313 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 DCAKDQ8WVC6 231 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 SPOCK2Q92563 424 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 SIGLEC10Q96LC7 697 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 MCCC1Q96RQ3 725 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-230ENST00000557427 VAT1Q99536 393 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 WDR26Q9H7D7 661 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 APMAPQ9HDC9 416 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 KCNK9Q9NPC2 374 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 NKIRAS1Q9NYS0 192 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 ZC3H7BQ9UGR2 993 aaKnown RBP12.29□□□□□ -0.44
SHMT2-230ENST00000557427 PPIL1Q9Y3C6 166 aa12.29□□□□□ -0.44
SHMT2-230ENST00000557427 TMEM184BQ9Y519 407 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-230ENST00000557427 IQANK1A0A1B0GTG1 560 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ERI2A8K979 691 aaKnown RBP12.28□□□□□ -0.44
SHMT2-230ENST00000557427 FAM155BO75949 473 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 CLDN7O95471 211 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 C1QAP02745 245 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 FGF1P05230 155 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 MMP2P08253 660 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 KRT15P19012 456 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 KELP23276 732 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 PTPN3P26045 913 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 STAT5AP42229 794 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 GPR1P46091 355 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 POLD2P49005 469 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 KIAA1024LP59773 190 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 SQSTM1Q13501 440 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ERV3-1Q14264 604 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 INPP5JQ15735 1006 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ALG1LQ6GMV1 187 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 RAET1GQ6H3X3 334 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 LRRC8BQ6P9F7 803 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 TECPR1Q7Z6L1 1165 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 NRROSQ86YC3 692 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 CNPY4Q8N129 248 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ZNF567Q8N184 647 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 MZB1Q8WU39 189 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 SLC44A1Q8WWI5 657 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 CKAP2Q8WWK9 683 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 PATE1Q8WXA2 126 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 SCAMP4Q969E2 229 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ALKBH8Q96BT7 664 aaKnown RBP12.28□□□□□ -0.44
SHMT2-230ENST00000557427 MOCOSQ96EN8 888 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 DTD2Q96FN9 168 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 SMC6Q96SB8 1091 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 EBNA1BP2Q99848 306 aaKnown RBP12.28□□□□□ -0.44
SHMT2-230ENST00000557427 TDRD1Q9BXT4 1180 aaKnown RBP12.28□□□□□ -0.44
SHMT2-230ENST00000557427 TRIM55Q9BYV6 548 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 UNKQ9C0B0 810 aaKnown RBP12.28□□□□□ -0.44
SHMT2-230ENST00000557427 FAM107BQ9H098 131 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 NSRP1Q9H0G5 558 aaKnown RBP12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ABCG8Q9H221 673 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 RABEP2Q9H5N1 569 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ZNF180Q9UJW8 692 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 TRHDEQ9UKU6 1024 aa12.28□□□□□ -0.44
SHMT2-230ENST00000557427 ANKRD36A6QL64 1941 aa12.27□□□□□ -0.44
SHMT2-230ENST00000557427 MTORP42345 2549 aa12.27□□□□□ -0.45
SHMT2-230ENST00000557427 RHPN2P1A8MT19 583 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms