RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PRAC1Q96KF2 57 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 POM121L2Q96KW2 1035 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 MCRIP2Q9BUT9 160 aaKnown RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 ABHD6Q9BV23 337 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 HRH4Q9H3N8 390 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 PLCXD1Q9NUJ7 323 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 BARHL2Q9NY43 387 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 EXOGQ9Y2C4 368 aaKnown RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.38□□□□□ -1.873e-6■□□□□ 10.3
SCFD1-216ENST00000555550 A0A087WW49 117 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 IGHV4-61A0A0C4DH41 118 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 H7C423 109 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 AP3D1O14617 1153 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 USO1O60763 962 aaKnown RBP3.37□□□□□ -1.87
SCFD1-216ENST00000555550 CDC123O75794 336 aaPredicted RBP3.37□□□□□ -1.87
SCFD1-216ENST00000555550 SORBS2O94875 1100 aaKnown RBP3.37□□□□□ -1.87
SCFD1-216ENST00000555550 IGHV4-59P01825 116 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 RAF1P04049 648 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 TPOP07202 933 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 FRMD6-AS1P0C7T7 363 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 MMP9P14780 707 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 TYMPP19971 482 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 PPARDQ03181 441 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 CYP4A22Q5TCH4 519 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 SPINK14Q6IE38 97 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 Q6ZSR9 355 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 RSRC2Q7L4I2 434 aaKnown RBP3.37□□□□□ -1.87
SCFD1-216ENST00000555550 MAATS1Q7Z4T9 603 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 MCEMP1Q8IX19 187 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 TTC39CQ8N584 583 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF611Q8N823 705 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 ANKRD52Q8NB46 1076 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 PPFIBP2Q8ND30 876 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 SAT2Q96F10 170 aaPredicted RBP3.37□□□□□ -1.87
SCFD1-216ENST00000555550 SGK494Q96LW2 274 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 CEP295NLQ96MC4 621 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 SLC22A12Q96S37 553 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 IWS1Q96ST2 819 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 ACKR4Q9NPB9 350 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 FLRT3Q9NZU0 649 aa3.37□□□□□ -1.87
SCFD1-216ENST00000555550 EXO1Q9UQ84 846 aaKnown RBP3.37□□□□□ -1.87
SCFD1-216ENST00000555550 PRR32B1ATL7 298 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 PTGES3LE9PB15 166 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 E9PI62 339 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 ATP6V0E1O15342 81 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 SSX4O60224 188 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 AP2A2O94973 939 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 PIGNO95427 931 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 VPREB1P12018 145 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 MAPK4P31152 587 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 MFAP4P55083 255 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 TMF1P82094 1093 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 MRPS5P82675 430 aaKnown RBP3.36□□□□□ -1.87
SCFD1-216ENST00000555550 DDX10Q13206 875 aaKnown RBP3.36□□□□□ -1.87
SCFD1-216ENST00000555550 MELKQ14680 651 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 FAAP20Q6NZ36 180 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 FAM114A1Q8IWE2 563 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 ADGRF2Q8IZF7 708 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 SCML4Q8N228 414 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 RAB42Q8N4Z0 105 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 CPSF7Q8N684 471 aaKnown RBP3.36□□□□□ -1.87
SCFD1-216ENST00000555550 GRHL3Q8TE85 626 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 HSD17B8Q92506 261 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 ERLEC1Q96DZ1 483 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 VGLL1Q99990 258 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 SYT15Q9BQS2 421 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 CDK19Q9BWU1 502 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 RTN4RQ9BZR6 473 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 P2RY12Q9H244 342 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 SLC7A10Q9NS82 523 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 INTS9Q9NV88 658 aaKnown RBP3.36□□□□□ -1.87
SCFD1-216ENST00000555550 RIPK3Q9Y572 518 aa3.36□□□□□ -1.87
SCFD1-216ENST00000555550 TO15178 435 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 MITFO75030 526 aaPredicted RBP3.35□□□□□ -1.87
SCFD1-216ENST00000555550 PRKRAO75569 313 aaKnown RBP3.35□□□□□ -1.87
SCFD1-216ENST00000555550 PRLRP16471 622 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 TNFAIP3P21580 790 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 HADHAP40939 763 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 PDX1P52945 283 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 DMPKQ09013 629 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 P2RY6Q15077 328 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF239Q16600 458 aaKnown RBP3.35□□□□□ -1.87
SCFD1-216ENST00000555550 FAM180BQ6P0A1 224 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 TMCO3Q6UWJ1 677 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF440Q8IYI8 595 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF614Q8N883 585 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 CCDC34Q96HJ3 373 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 FNDC11Q9BVV2 318 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 RHCGQ9UBD6 479 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 OSGIN1Q9UJX0 560 aa3.35□□□□□ -1.87
SCFD1-216ENST00000555550 IGLV7-46A0A075B6I9 117 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 A0A1W2PR77 199 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 CDRT15L2A8MXV6 281 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 B4DLN1 442 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 F5H0A9 414 aaPredicted RBP3.34□□□□□ -1.87
SCFD1-216ENST00000555550 CEBPBP17676 345 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 EFNA1P20827 205 aaPredicted RBP3.34□□□□□ -1.87
SCFD1-216ENST00000555550 TM4SF1P30408 202 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 MAGEA11P43364 429 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 NKX2-1P43699 371 aaPredicted RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms