RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 ADAMTS18Q8TE60 1221 aa13.34□□□□□ -0.27
PRPF39-204ENST00000553605 HSPH1Q92598 858 aa13.34□□□□□ -0.27
PRPF39-204ENST00000553605 GPR63Q9BZJ6 419 aa13.34□□□□□ -0.27
PRPF39-204ENST00000553605 TRIM7Q9C029 511 aa13.34□□□□□ -0.27
PRPF39-204ENST00000553605 XPO4Q9C0E2 1151 aaKnown RBP13.34□□□□□ -0.27
PRPF39-204ENST00000553605 SPRTNQ9H040 489 aaPredicted RBP13.34□□□□□ -0.27
PRPF39-204ENST00000553605 MAGEE1Q9HCI5 957 aa13.34□□□□□ -0.27
PRPF39-204ENST00000553605 TXLNGQ9NUQ3 528 aa13.34□□□□□ -0.27
PRPF39-204ENST00000553605 NUP210LQ5VU65 1888 aa13.33□□□□□ -0.27
PRPF39-204ENST00000553605 ANKRD12Q6UB98 2062 aa13.33□□□□□ -0.27
PRPF39-204ENST00000553605 TRAV17A0A0B4J275 112 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 DYTNA2CJ06 578 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 H3BMH7 237 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 EPHB6O15197 1021 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 SLC19A2O60779 497 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 CRYABP02511 175 aaKnown RBP13.33□□□□□ -0.28
PRPF39-204ENST00000553605 MMP2P08253 660 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 KLK2P20151 261 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 IL1R2P27930 398 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 NDUFS1P28331 727 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 PBLDP30039 288 aaPredicted RBP13.33□□□□□ -0.28
PRPF39-204ENST00000553605 PPP2R2AP63151 447 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 SRSF11Q05519 484 aaKnown RBP13.33□□□□□ -0.28
PRPF39-204ENST00000553605 GSE1Q14687 1217 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 C3AR1Q16581 482 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 BOLA3Q53S33 107 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 KIRREL2Q6UWL6 708 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 ACBD4Q8NC06 268 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 CHDHQ8NE62 594 aaPredicted RBP13.33□□□□□ -0.28
PRPF39-204ENST00000553605 SPDYE1Q8NFV5 336 aaPredicted RBP13.33□□□□□ -0.28
PRPF39-204ENST00000553605 DNAJB8Q8NHS0 232 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 SRMSQ9H3Y6 488 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.33□□□□□ -0.28
PRPF39-204ENST00000553605 ABI3Q9P2A4 366 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 ZNF711Q9Y462 761 aa13.33□□□□□ -0.28
PRPF39-204ENST00000553605 NCOA6Q14686 2063 aaPredicted RBP13.33□□□□□ -0.28
PRPF39-204ENST00000553605 OR2AG2A6NM03 316 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 BTN3A3O00478 584 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 CCNCP24863 283 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 TNFSF10P50591 281 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 GALNT2Q10471 571 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 BECN1Q14457 450 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 TUBB8Q3ZCM7 444 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 MLKLQ8NB16 471 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 LCN9Q8WX39 176 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 FATE1Q969F0 183 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 ZCCHC2Q9C0B9 1178 aaKnown RBP13.32□□□□□ -0.28
PRPF39-204ENST00000553605 CLSTN2Q9H4D0 955 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 FAM60AQ9NP50 221 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 BPIFA1Q9NP55 256 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 SLC22A11Q9NSA0 550 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 TAS2R14Q9NYV8 317 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 PLA2G3Q9NZ20 509 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 TINAGQ9UJW2 476 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 ACSL5Q9ULC5 683 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 HS3ST3B1Q9Y662 390 aa13.32□□□□□ -0.28
PRPF39-204ENST00000553605 MAP1AP78559 2803 aaPredicted RBP13.32□□□□□ -0.28
PRPF39-204ENST00000553605 BTN3A1O00481 513 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 ZSCAN9O15535 394 aaPredicted RBP13.31□□□□□ -0.28
PRPF39-204ENST00000553605 RASAL1O95294 804 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 SLC35G4P0C7Q5 338 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 RARAP10276 462 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 DNAJA1P31689 397 aaKnown RBP13.31□□□□□ -0.28
PRPF39-204ENST00000553605 PCK1P35558 622 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 IST1P53990 364 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 IFI16Q16666 785 aaKnown RBP13.31□□□□□ -0.28
PRPF39-204ENST00000553605 CCDC122Q5T0U0 273 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 ZNF655Q8N720 491 aaPredicted RBP13.31□□□□□ -0.28
PRPF39-204ENST00000553605 ACVR1CQ8NER5 493 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 VPS50Q96JG6 964 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 TSGA13Q96PP4 275 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 TREX2Q9BQ50 279 aaPredicted RBP13.31□□□□□ -0.28
PRPF39-204ENST00000553605 CXXC4Q9H2H0 198 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 DEF6Q9H4E7 631 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 PCDH18Q9HCL0 1135 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 GPAMQ9HCL2 828 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 TNFRSF10DQ9UBN6 386 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 PRRC2AP48634 2157 aaKnown RBP13.31□□□□□ -0.28
PRPF39-204ENST00000553605 CACNA1CQ13936 2221 aa13.31□□□□□ -0.28
PRPF39-204ENST00000553605 MGAT4DA6NG13 374 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 TMCO5BA8MYB1 307 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 HCRTR1O43613 425 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 MFSD11O43934 449 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 CTSBP07858 339 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 TCF4P15884 667 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 DEFB110Q30KQ9 67 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 LDLRAP1Q5SW96 308 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 FNBP1LQ5T0N5 605 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 TLDC1Q6P9B6 456 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 OVCH1Q7RTY7 1134 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 LRRN4Q8WUT4 740 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 HAS2Q92819 552 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 TRIB3Q96RU7 358 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 FOXC2Q99958 501 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 TMEM121Q9BTD3 319 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 REPIN1Q9BWE0 567 aaKnown RBP13.3□□□□□ -0.28
PRPF39-204ENST00000553605 MRM3Q9HC36 420 aaKnown RBP13.3□□□□□ -0.28
PRPF39-204ENST00000553605 TAB2Q9NYJ8 693 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 MEMO1Q9Y316 297 aa13.3□□□□□ -0.28
PRPF39-204ENST00000553605 HEBP2Q9Y5Z4 205 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms