RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TRMT11Q7Z4G4 463 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 HSD11B1LQ7Z5J1 315 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SYTL1Q8IYJ3 562 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RGL4Q8IZJ4 473 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PELI3Q8N2H9 469 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 DCAF4L2Q8NA75 395 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ITFG1Q8TB96 612 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 FAM162AQ96A26 154 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 IL17FQ96PD4 163 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CCDC90BQ9GZT6 254 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ADNPQ9H2P0 1102 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 NANOGQ9H9S0 305 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PARVBQ9HBI1 364 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 COMMD8Q9NX08 183 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM98Q9Y2Y6 226 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 A0A1B0GVG6 124 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 H3BSA7 217 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 E2F3O00716 465 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 OR7A17O14581 309 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 EI24O14681 340 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 GRM6O15303 877 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 LZTS3O60299 673 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ABCB7O75027 752 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ARHGEF15O94989 841 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 CYP4B1P13584 511 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 MSH3P20585 1137 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 DNAJB1P25685 340 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PDHA2P29803 388 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PRDX6P30041 224 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 CTSCP53634 463 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 CYP4F2P78329 520 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 IRF8Q02556 426 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PTSQ03393 145 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SMARCB1Q12824 385 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SPIDRQ14159 915 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 NEDD8Q15843 81 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TYSND1Q2T9J0 566 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TMTC4Q5T4D3 741 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 HMBOX1Q6NT76 420 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SBSNQ6UWP8 590 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SNX20Q7Z614 316 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 FAM20CQ8IXL6 584 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 KIAA2013Q8IYS2 634 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 C7orf61Q8IZ16 206 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 NXPE1Q8N323 547 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 FAM86B1Q8N7N1 296 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SLCO4A1Q96BD0 722 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 VWCEQ96DN2 955 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 MAELQ96JY0 434 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 OR52E6Q96RD3 313 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ZBTB18Q99592 522 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TRMOQ9BU70 441 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PAPOLBQ9NRJ5 636 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TDP1Q9NUW8 608 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PKD2L2Q9NZM6 624 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SH3BP4Q9P0V3 963 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 DNMT3BQ9UBC3 853 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 GNPTGQ9UJJ9 305 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 OAS3Q9Y6K5 1087 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ZFC3H1O60293 1989 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TSC2P49815 1807 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TBC1D3BA6NDS4 549 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SH3BP5O60239 455 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 MMP20O60882 483 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 FGBP02675 491 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 RPS17P08708 135 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ANXA5P08758 320 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PAX3P23760 479 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PSMA4P25789 261 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 POLD2P49005 469 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 NFKB2Q00653 900 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 CHIT1Q13231 466 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 MAPKAPK3Q16644 382 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 KANK2Q63ZY3 851 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM215Q68D42 235 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 OR4F3Q6IEY1 312 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM220Q6QAJ8 160 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 USP45Q70EL2 814 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 GALNT5Q7Z7M9 940 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 HMGN2P46Q86SG4 172 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ADAMTSL2Q86TH1 951 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 TCEAL8Q8IYN2 117 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 CFAP206Q8IYR0 622 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 CMTR2Q8IYT2 770 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 OR2T34Q8NGX1 318 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 OR2T3Q8NH03 318 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 PROKR1Q8TCW9 393 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 C2orf15Q8WU43 125 aaKnown RBP5.48□□□□□ -1.53
LIMA1-215ENST00000552823 KCNJ9Q92806 393 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ASB9Q96DX5 294 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 L3HYPDHQ96EM0 354 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 ALG14Q96F25 216 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 NSMCE2Q96MF7 247 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 INPP5KQ9BT40 448 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 FAM83DQ9H4H8 585 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 Q9H521 79 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 IKZF5Q9H5V7 419 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 SMURF2Q9HAU4 748 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 VAPAQ9P0L0 249 aa5.48□□□□□ -1.53
LIMA1-215ENST00000552823 RIMS3Q9UJD0 308 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms