RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CLEC1AQ8NC01 280 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 FER1L6-AS2Q96M78 137 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 SLC7A5P2Q9GIP4 190 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 HAUS4Q9H6D7 363 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 FANCEQ9HB96 536 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 MAGEE1Q9HCI5 957 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 MRPL47Q9HD33 250 aaKnown RBP10.19□□□□□ -0.78
VPS29-208ENST00000550267 BPIFA1Q9NP55 256 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 ZNF358Q9NW07 568 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 CSAG2Q9Y5P2 127 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 CSMD2Q7Z408 3487 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 LRRC53A6NM62 1247 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 C9J4A7 227 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 KCNK1O00180 336 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 AURKAO14965 403 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 KCNJ13O60928 360 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 KLF7O75840 302 aaPredicted RBP10.18□□□□□ -0.78
VPS29-208ENST00000550267 IPO13O94829 963 aaKnown RBP10.18□□□□□ -0.78
VPS29-208ENST00000550267 GZMAP12544 262 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 PBLDP30039 288 aaPredicted RBP10.18□□□□□ -0.78
VPS29-208ENST00000550267 PREPP48147 710 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 ARSEP51690 589 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 GBE1Q04446 702 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 ZBTB17Q13105 803 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 DPYSL3Q14195 570 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 PIGHQ14442 188 aaPredicted RBP10.18□□□□□ -0.78
VPS29-208ENST00000550267 ASIC2Q16515 512 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 PCSK7Q16549 785 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 ZXDCQ2QGD7 858 aaPredicted RBP10.18□□□□□ -0.78
VPS29-208ENST00000550267 ATP13A4Q4VNC1 1196 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 CCDC183Q5T5S1 534 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 MLIPQ5VWP3 458 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 CARFQ8N187 725 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 RASGEF1AQ8N9B8 481 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS29-208ENST00000550267 CCNYQ8ND76 341 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 FAM71BQ8TC56 605 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 TM9SF4Q92544 642 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 C12orf66Q96MD2 445 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 TTC25Q96NG3 672 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 CEP41Q9BYV8 373 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 WWP1Q9H0M0 922 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 NUP62CLQ9H1M0 184 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 NEUROD4Q9HD90 331 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 SLC24A2Q9UI40 661 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 ITGB1BP2Q9UKP3 347 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 NOVA2Q9UNW9 492 aaKnown RBP10.18□□□□□ -0.78
VPS29-208ENST00000550267 PADI2Q9Y2J8 665 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 SPO11Q9Y5K1 396 aa10.18□□□□□ -0.78
VPS29-208ENST00000550267 KRTAP9-6A0A140TA67 174 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 HEATR9A2RTY3 570 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 OR2AG2A6NM03 316 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 PEX12O00623 359 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 GPR39O43194 453 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 ZNF749O43361 778 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 DYRK3O43781 588 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 MYBL1P10243 752 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 HLA-DPA1P20036 260 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 AGXTP21549 392 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 ITGA3P26006 1051 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 GJC1P36383 396 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 HADHAP40939 763 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 SSR1P43307 286 aaKnown RBP10.17□□□□□ -0.78
VPS29-208ENST00000550267 LMAN1P49257 510 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 FOXL2P58012 376 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 ADCY2Q08462 1091 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 SLC10A2Q12908 348 aaPredicted RBP10.17□□□□□ -0.78
VPS29-208ENST00000550267 SSPNQ14714 243 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 HIF1AQ16665 826 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 E4F1Q66K89 784 aaPredicted RBP10.17□□□□□ -0.78
VPS29-208ENST00000550267 TMEM220Q6QAJ8 160 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 APTXQ7Z2E3 356 aaKnown RBP10.17□□□□□ -0.78
VPS29-208ENST00000550267 FJX1Q86VR8 437 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 NIPA2Q8N8Q9 360 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 ANKRD20A12PQ8NF67 263 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 BRSK1Q8TDC3 778 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 GRHL3Q8TE85 626 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 HDAC11Q96DB2 347 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 LURAP1Q96LR2 239 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 IP6K3Q96PC2 410 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 SLC30A3Q99726 388 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 WDR77Q9BQA1 342 aaPredicted RBP10.17□□□□□ -0.78
VPS29-208ENST00000550267 DHRS4Q9BTZ2 278 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 KIR3DX1Q9H7L2 352 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 C1GALT1Q9NS00 363 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 P4HTMQ9NXG6 502 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 COPG2Q9UBF2 871 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 FAM8A1Q9UBU6 413 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 POMT2Q9UKY4 750 aa10.17□□□□□ -0.78
VPS29-208ENST00000550267 PTRH2Q9Y3E5 179 aaKnown RBP10.17□□□□□ -0.78
VPS29-208ENST00000550267 GSAPA4D1B5 854 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 E7EQ34 232 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 UGT1A9O60656 530 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 KLHL41O60662 606 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 IGHEP01854 428 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 CBSLP0DN79 551 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 EDN3P14138 238 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 ST6GAL1P15907 406 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 UGT1A6P19224 532 aa10.16□□□□□ -0.78
VPS29-208ENST00000550267 UGT1A1P22309 533 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms