RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 PRDX3P30048 256 aaKnown RBP10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 LMAN1P49257 510 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 KPNA2P52292 529 aaKnown RBP10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 PPP1CAP62136 330 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 ERV3-1Q14264 604 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 POU6F1Q14863 301 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 LACTB2Q53H82 288 aaPredicted RBP10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 TCTN3Q6NUS6 607 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 C4orf22Q6V702 233 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 PACS1Q6VY07 963 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 SYVN1Q86TM6 617 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 HOOK3Q86VS8 718 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 AMIGO1Q86WK6 493 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 TMEM139Q8IV31 216 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 TFGQ92734 400 aaPredicted RBP10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 ZNF501Q96CX3 271 aaPredicted RBP10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 ABHD17AQ96GS6 310 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 DPH2Q9BQC3 489 aaPredicted RBP10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 TSSK1BQ9BXA7 367 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 TWSG1Q9GZX9 223 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 OR52A5Q9H2C5 316 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 SMARCAL1Q9NZC9 954 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 FAM8A1Q9UBU6 413 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 POMT2Q9UKY4 750 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 PACSIN2Q9UNF0 486 aaPredicted RBP10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 KCNMB2Q9Y691 235 aa10.58□□□□□ -0.72
VTI1BP3-201ENST00000550220 GSAPA4D1B5 854 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 SLC9B1P1A6NJY1 282 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 NTRK1P04629 796 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 F8A1P23610 371 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 ADRA1DP25100 572 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 MSNP26038 577 aaKnown RBP10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 SHMT2P34897 504 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 CASRP41180 1078 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 PREPP48147 710 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 GDF10P55107 478 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 KCNAB1Q14722 419 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 UGT8Q16880 541 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 ZNF658BQ4V348 819 aaPredicted RBP10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 IZUMO3Q5VZ72 239 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 PPP1R21Q6ZMI0 780 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 ZNF517Q6ZMY9 492 aaPredicted RBP10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 APLFQ8IW19 511 aaPredicted RBP10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 CCDC89Q8N998 374 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 CT55Q8WUE5 264 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 SGSM3Q96HU1 749 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 RANBP9Q96S59 729 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 C17orf62Q9BQA9 187 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 DESI2Q9BSY9 194 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 PITPNM3Q9BZ71 974 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 ANAPC5Q9UJX4 755 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 ZNF148Q9UQR1 794 aa10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 FARSAQ9Y285 508 aaKnown RBP10.57□□□□□ -0.72
VTI1BP3-201ENST00000550220 CDC14CA4D256 554 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 CCL22O00626 93 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 LIASO43766 372 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 RFPL1O75677 317 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 TIAF1O95411 115 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 IFNB1P01574 187 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 RPN2P04844 631 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 CD63P08962 238 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 RAB40ALP0C0E4 278 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 CDKN1CP49918 316 aaPredicted RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 PMS2P54278 862 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 NFKB2Q00653 900 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 KLRB1Q12918 225 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 BOP1Q14137 746 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 RPS6KA1Q15418 735 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 DBN1Q16643 649 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 DNAJC21Q5F1R6 531 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 AARS2Q5JTZ9 985 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 DUS1LQ6P1R4 473 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 AFTPHQ6ULP2 937 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 GAS2L3Q86XJ1 694 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 PTRH1Q86Y79 214 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 SLC13A5Q86YT5 568 aaPredicted RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 PIANPQ8IYJ0 282 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 TBC1D21Q8IYX1 336 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 LILRA3Q8N6C8 439 aaPredicted RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 CLDN19Q8N6F1 224 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 OR52E1Q8NGJ3 308 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 OR52K1Q8NGK4 314 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 MAIP1Q8WWC4 291 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 ELMO1Q92556 727 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 MR1Q95460 341 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 SLC7A5P2Q9GIP4 190 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 CHRNA10Q9GZZ6 450 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 ACTL8Q9H568 366 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 ETNK1Q9HBU6 452 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 ZNF71Q9NQZ8 489 aaPredicted RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 OR6C2Q9NZP2 312 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 PAK5Q9P286 719 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 G3BP2Q9UN86 482 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 ASF1AQ9Y294 204 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 MAN2B2Q9Y2E5 1009 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 R3HDM2Q9Y2K5 976 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 ZKSCAN5Q9Y2L8 839 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 MRPS18BQ9Y676 258 aaKnown RBP10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 AP1M2Q9Y6Q5 423 aa10.56□□□□□ -0.72
VTI1BP3-201ENST00000550220 CCDC78A2IDD5 438 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms