RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 SERTAD3Q9UJW9 196 aa12.49□□□□□ -0.41
PTCH1-218ENST00000548945 AAR2Q9Y312 384 aaKnown RBP12.49□□□□□ -0.41
PTCH1-218ENST00000548945 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.49□□□□□ -0.41
PTCH1-218ENST00000548945 IGLV3-16A0A075B6K0 115 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 TMEM150CB9EJG8 249 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 POLBP06746 335 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 CAPN1P07384 714 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 GSTM1P09488 218 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 ATP1B2P14415 290 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-218ENST00000548945 ITGALP20701 1170 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 CYP2A7P20853 494 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 PRDX3P30048 256 aaKnown RBP12.48□□□□□ -0.41
PTCH1-218ENST00000548945 HADHAP40939 763 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 PREPP48147 710 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 ARCN1P48444 511 aaKnown RBP12.48□□□□□ -0.41
PTCH1-218ENST00000548945 COPS2P61201 443 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 GSTM4Q03013 218 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 RPA4Q13156 261 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 PTPRCAPQ14761 206 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 LLGL1Q15334 1064 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 INPP5JQ15735 1006 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-218ENST00000548945 GPR33Q49SQ1 333 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 ZNF789Q5FWF6 425 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 C11orf63Q6NUN7 778 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 JMJD6Q6NYC1 403 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-218ENST00000548945 FAM198BQ6UWH4 519 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 SNX20Q7Z614 316 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 DAAM2Q86T65 1068 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 CCDC50Q8IVM0 306 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 SYTL1Q8IYJ3 562 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 OR1L3Q8NH93 324 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 SSC4DQ8WTU2 575 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 PNPLA2Q96AD5 504 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 HAUS1Q96CS2 278 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 PPM1MQ96MI6 270 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 IP6K3Q96PC2 410 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 COPS8Q99627 209 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 C17orf62Q9BQA9 187 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 DHRS4Q9BTZ2 278 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 SLC29A3Q9BZD2 475 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 OR52A5Q9H2C5 316 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 MVB12BQ9H7P6 319 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 VPS37BQ9H9H4 285 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 PCMTD2Q9NV79 361 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 FEZ2Q9UHY8 353 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-218ENST00000548945 CRLS1Q9UJA2 301 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 EFR3BQ9Y2G0 817 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 PCM1Q15154 2024 aa12.48□□□□□ -0.41
PTCH1-218ENST00000548945 GSAPA4D1B5 854 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 H7C0C1 242 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 IFRD1O00458 451 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 BTN3A1O00481 513 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ZNF189O75820 626 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 STK10O94804 968 aaKnown RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 DDAH2O95865 285 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ST6GAL1P15907 406 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 RBL1P28749 1068 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ATP5OP48047 213 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ZNF140P52738 457 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ITGA1P56199 1179 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 MSLNQ13421 630 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 PRPSAP1Q14558 356 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 NCF4Q15080 339 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ZNF658BQ4V348 819 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 PRAMEF17Q5VTA0 474 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 LCN10Q6JVE6 187 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ZNF449Q6P9G9 518 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 FBXO38Q6PIJ6 1188 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 SARM1Q6SZW1 724 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 RAB43Q86YS6 212 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 LILRA3Q8N6C8 439 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 FDCSPQ8NFU4 85 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 SMAD5Q99717 465 aaKnown RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 CHRNA10Q9GZZ6 450 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 COG4Q9H9E3 785 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ARNT2Q9HBZ2 717 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 SLAMF7Q9NQ25 335 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 GPR83Q9NYM4 423 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 C5AR2Q9P296 337 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 FAM8A1Q9UBU6 413 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 PADI2Q9Y2J8 665 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 ABCA12Q86UK0 2595 aa12.47□□□□□ -0.41
PTCH1-218ENST00000548945 MDC1Q14676 2089 aaKnown RBP12.47□□□□□ -0.41
PTCH1-218ENST00000548945 NUP210LQ5VU65 1888 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 DIDO1Q9BTC0 2240 aaKnown RBP12.46□□□□□ -0.41
PTCH1-218ENST00000548945 DOCK10Q96BY6 2186 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 TRBV5-4A0A0C4DH59 114 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 CCDC66A2RUB6 948 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 C2orf74A8MZ97 194 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 C9J4A7 227 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 E7EQ34 232 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 BTN3A3O00478 584 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 LCA5LO95447 670 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 IGHEP01854 428 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 CD63P08962 238 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 PTPN7P35236 360 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 MARCKSL1P49006 195 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 ANKRD20A2Q5SQ80 823 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 ANKRD20A1Q5TYW2 823 aa12.46□□□□□ -0.41
PTCH1-218ENST00000548945 ANKRD20A3Q5VUR7 823 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms