RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 APOL5Q9BWW9 433 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 ASIC5Q9NY37 505 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 WWOXQ9NZC7 414 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 PKD2L2Q9NZM6 624 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 DLGAP2Q9P1A6 1054 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 RWDD3Q9Y3V2 267 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 CCDC154A6NI56 674 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 ARNTLO00327 626 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 AP1G1O43747 822 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 EPORP19235 508 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 IRS1P35568 1242 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 NTHL1P78549 312 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 FOLH1Q04609 750 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 CAPRIN1Q14444 709 aaKnown RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 KIAA0040Q15053 153 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 HCAR2Q8TDS4 363 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 SLC12A9Q9BXP2 914 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 MUC13Q9H3R2 512 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 SUN2Q9UH99 717 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 WNT6Q9Y6F9 365 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 ATG2AQ2TAZ0 1938 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 IFRD1O00458 451 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 SGTAO43765 313 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 TLL1O43897 1013 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 XYLBO75191 536 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 CISD3P0C7P0 127 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 CYP2A6P11509 494 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 POLR2EP19388 210 aaKnown RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 JAK1P23458 1154 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 GDF5P43026 501 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 PLEKHS1Q5SXH7 462 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 PSRC1Q6PGN9 363 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 PRR23BQ6ZRT6 265 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 USP7Q93009 1102 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 ZNF707Q96C28 371 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 PPP3R2Q96LZ3 170 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 EGFL8Q99944 293 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 IL1RL2Q9HB29 575 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 ACTR3BQ9P1U1 418 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 PDE10AQ9Y233 779 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 LINC01553A4QN01 128 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 ARHGEF15O94989 841 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 CTSLP07711 333 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 UBTFL6P0CB48 400 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 ATP1B2P14415 290 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 ZNF26P17031 533 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 PIK3CGP48736 1102 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 ZXDCQ2QGD7 858 aaPredicted RBP13.5□□□□□ -0.25
RTN3-210ENST00000540798 UGT2A3Q6UWM9 527 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 HSD11B1LQ7Z5J1 315 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 KIAA2013Q8IYS2 634 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 ASB11Q8WXH4 323 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 SLC29A3Q9BZD2 475 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 PDP2Q9P2J9 529 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 DKK3Q9UBP4 350 aa13.5□□□□□ -0.25
RTN3-210ENST00000540798 TTC34A8MYJ7 566 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 GFYI3L273 518 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 SLC16A5O15375 505 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 TPD52L2O43399 206 aaKnown RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 KATNA1O75449 491 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 LEFTY1O75610 366 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 C8GP07360 202 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 G6PDP11413 515 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 TIMP2P16035 220 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 CEBPBP17676 345 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 WEE1P30291 646 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 HMOX2P30519 316 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 PRKG2Q13237 762 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 NFYCQ13952 458 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 RFTN2Q52LD8 501 aaPredicted RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 LRRC73Q5JTD7 316 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 HMBOX1Q6NT76 420 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 CYP20A1Q6UW02 462 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 CYP2R1Q6VVX0 501 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 NEK10Q6ZWH5 1172 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 MYLIPQ8WY64 445 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 PAPOLBQ9NRJ5 636 aaKnown RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 CCM2LQ9NUG4 571 aaPredicted RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 CNOT6Q9ULM6 557 aaKnown RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 SLC28A1O00337 649 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 STK16O75716 305 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 PAPLNO95428 1278 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 SRPRAP08240 638 aaKnown RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 ANXA5P08758 320 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 SLC6A12P48065 614 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 EEFSECP57772 596 aaKnown RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 SP140Q13342 867 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 AP5B1Q2VPB7 878 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 MAP7D1Q3KQU3 841 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 HENMT1Q5T8I9 393 aaKnown RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 CWF19L1Q69YN2 538 aaKnown RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 MBOAT1Q6ZNC8 495 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 TCAIMQ8N3R3 496 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 LRTOMTQ8WZ04 291 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 LRIG1Q96JA1 1093 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 LRRC3BQ96PB8 259 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 NEUROG3Q9Y4Z2 214 aa13.49□□□□□ -0.25
RTN3-210ENST00000540798 KIF26AQ9ULI4 1882 aaPredicted RBP13.49□□□□□ -0.25
RTN3-210ENST00000540798 UPK3BL1B0FP48 263 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 UPK3BL2E5RIL1 263 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms