RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 LRATO95237 230 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 OTCP00480 354 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 F9P00740 461 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 COL6A2P12110 1019 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PRDX5P30044 214 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 S100A10P60903 97 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 CDK18Q07002 472 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 XKR3Q5GH77 459 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SIGIRRQ6IA17 410 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 PGAP1Q75T13 922 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 SVBPQ8N300 66 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PCSK9Q8NBP7 692 aaKnown RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 OR2L3Q8NG85 312 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 PPP1R13LQ8WUF5 828 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 C15orf40Q8WUR7 153 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 NRG4Q8WWG1 115 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 ZNF607Q96SK3 696 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 GATA5Q9BWX5 397 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 FAM126AQ9BYI3 521 aaPredicted RBP8.64□□□□□ -1.03
YBX3-208ENST00000540447 NOX1Q9Y5S8 564 aa8.64□□□□□ -1.03
YBX3-208ENST00000540447 TTC37Q6PGP7 1564 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 MEIOCA2RUB1 952 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ZNF254O75437 659 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 IFNGP01579 166 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 AFF3P51826 1226 aaKnown RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 EEFSECP57772 596 aaKnown RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 SEC23AQ15436 765 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ASTE1Q2TB18 679 aaPredicted RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 C6orf141Q5SZD1 244 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 DCST1Q5T197 706 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 RNF44Q7L0R7 432 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TMEM161BQ8NDZ6 487 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 BCL7BQ9BQE9 202 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 MMP28Q9H239 520 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TPT1P8Q9HAU6 139 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SCUBE2Q9NQ36 999 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 MARK1Q9P0L2 795 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CFAP97Q9P2B7 532 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 A0A088AWK7 358 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 H3BUI4 141 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TSPAN3O60637 253 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 HMGN1P05114 100 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 AGTR1P30556 359 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 RPL4P36578 427 aaKnown RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 ANXA8L1Q5VT79 327 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CLEC6AQ6EIG7 209 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ETFRF1Q6IPR1 90 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 LRRC55Q6ZSA7 311 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 STK40Q8N2I9 435 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ZNF283Q8N7M2 679 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TARS2Q9BW92 718 aaKnown RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 FEM1BQ9UK73 627 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 GH2P01242 217 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CYBBP04839 570 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 NR2F1P10589 423 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CCR10P46092 362 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 NUDT6P53370 316 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TAS2R40P59535 323 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TAS2R41P59536 307 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 STXBP5Q5T5C0 1151 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 C3P1Q6ZMU1 363 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TMEM185AQ8NFB2 350 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 KLHL6Q8WZ60 621 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CLIP3Q96DZ5 547 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CELF6Q96J87 481 aaKnown RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 TCF25Q9BQ70 676 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SCPEP1Q9HB40 452 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SMIM30A4D0T7 59 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 C7P10643 843 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 DDCP20711 480 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 DNAJA1P31689 397 aaKnown RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 CYP2C18P33260 490 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ZNF543Q08ER8 600 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CHAF1BQ13112 559 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 LRRC37A5PQ49AS3 106 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 GPR158Q5T848 1215 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SLC30A6Q6NXT4 461 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 GADL1Q6ZQY3 521 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 TMED4Q7Z7H5 227 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 GTPBP8Q8N3Z3 284 aaPredicted RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 STK35Q8TDR2 534 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ZBED3Q96IU2 234 aaPredicted RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 RCOR3Q9P2K3 495 aaPredicted RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 EXTL2Q9UBQ6 330 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SPACA6W5XKT8 324 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 UBXN7O94888 489 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 IFNA2P01563 188 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SLC5A2P31639 672 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 GRIA2P42262 883 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 SMUG1Q53HV7 270 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 DCAF15Q66K64 600 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 HGSNATQ68CP4 663 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ATG9AQ7Z3C6 839 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 FAM98AQ8NCA5 519 aaKnown RBP8.63□□□□□ -1.03
YBX3-208ENST00000540447 OR4A15Q8NGL6 344 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ZNF675Q8TD23 568 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 CPT1BQ92523 772 aa8.63□□□□□ -1.03
YBX3-208ENST00000540447 ZNF641Q96N77 438 aaPredicted RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms