RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR6J1Q8NGC5 347 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 ETNPPLQ8TBG4 499 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 TMEM18Q96B42 140 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 TIGD1Q96MW7 591 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 PIP5K1AQ99755 562 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 SLC25A33Q9BSK2 321 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 PUS3Q9BZE2 481 aaKnown RBP3.88□□□□□ -1.79
CD44-235ENST00000532339 TRIM4Q9C037 500 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 RANBP17Q9H2T7 1088 aaKnown RBP3.88□□□□□ -1.79
CD44-235ENST00000532339 MUC13Q9H3R2 512 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 ENTPD7Q9NQZ7 604 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 PCDHB16Q9NRJ7 776 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 OCIAD1Q9NX40 245 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 MPP6Q9NZW5 540 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 HSPB7Q9UBY9 170 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 FBXO40Q9UH90 709 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 AGO1Q9UL18 857 aaKnown RBP3.88□□□□□ -1.79
CD44-235ENST00000532339 DHDHQ9UQ10 334 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 SIPA1L1O43166 1804 aa3.88□□□□□ -1.79
CD44-235ENST00000532339 MYH2Q9UKX2 1941 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 SDK1Q7Z5N4 2213 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 MCM3APO60318 1980 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 IGLV5-52A0A0A0MRZ9 124 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 C17orf113A0A1B0GUU1 675 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 PCNX2A6NKB5 2137 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 ANHXE9PGG2 379 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 CDX4O14627 284 aaPredicted RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 GRID2O43424 1007 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 N4BP1O75113 896 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 AFPP02771 609 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 COX7A2P14406 83 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 ALOX12P18054 663 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 YWHAQP27348 245 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 C21orf33P30042 268 aaPredicted RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 BSGP35613 385 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 DPP6P42658 865 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 RAD52P43351 418 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 IRX6P78412 446 aaPredicted RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 HNRNPDQ14103 355 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 RPE65Q16518 533 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 ZNF718Q3SXZ3 478 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 ZNF672Q499Z4 452 aaPredicted RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 FAM76BQ5HYJ3 339 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 TMEM81Q6P7N7 255 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 CLEC18BQ6UXF7 455 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 ZNF852Q6ZMS4 543 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 C15orf39Q6ZRI6 1047 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 PATL1Q86TB9 770 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 TICAM1Q8IUC6 712 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 RBFAQ8N0V3 343 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 MRPL43Q8N983 215 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 MRPS27Q92552 414 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 NSUN4Q96CB9 384 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 KLHL29Q96CT2 875 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 MED8Q96G25 268 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 IGSF21Q96ID5 467 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 NUDT16L1Q9BRJ7 211 aaKnown RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 LHPPQ9H008 270 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 PRKRIP1Q9H875 184 aaPredicted RBP3.87□□□□□ -1.79
CD44-235ENST00000532339 DIAPH3Q9NSV4 1193 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 TCP11L1Q9NUJ3 509 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 HAUS2Q9NVX0 235 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 PEMTQ9UBM1 199 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 VPS28Q9UK41 221 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 RIPK3Q9Y572 518 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 ADGRG4Q8IZF6 3080 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 DLG5Q8TDM6 1919 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 NID2Q14112 1375 aa3.87□□□□□ -1.79
CD44-235ENST00000532339 CENPEQ02224 2701 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 UTP20O75691 2785 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 A0A096LPK6 155 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 TEX13CA0A0J9YWL9 993 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 PABPN1LA6NDY0 278 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 AGAP14A8MT82 685 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 ATP2A1O14983 1001 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 RRP8O43159 456 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 CEP104O60308 925 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 TMCC2O75069 709 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 KRT36O76013 467 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 ADAP00813 363 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 SNRNP70P08621 437 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 HOXA6P31267 233 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 ARL3P36405 182 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 EIF2S3P41091 472 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 GPR12P47775 334 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 RPL7AP62424 266 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 GSTO1P78417 241 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 CNTN2Q02246 1040 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 NUCB1Q02818 461 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 MECOMQ03112 1051 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 HTR4Q13639 388 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 MYBPC2Q14324 1141 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 SMC1AQ14683 1233 aaKnown RBP3.86□□□□□ -1.79
CD44-235ENST00000532339 CCNG2Q16589 344 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 KRBA2Q6ZNG9 492 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 ATG9AQ7Z3C6 839 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 GALNT5Q7Z7M9 940 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 SERINC5Q86VE9 423 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 THNSL1Q8IYQ7 743 aa3.86□□□□□ -1.79
CD44-235ENST00000532339 CPXM2Q8N436 756 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms