RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ITPRIPL1Q6GPH6 555 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CASC4Q6P4E1 433 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CES3Q6UWW8 571 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 UNC5DQ6UXZ4 953 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PPP1R21Q6ZMI0 780 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TPGS1Q6ZTW0 290 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MICALCLQ6ZW33 695 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 HTR3DQ70Z44 454 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CHST9Q7L1S5 443 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 KDELC2Q7Z4H8 507 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PPP1R3BQ86XI6 285 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PALM2Q8IXS6 379 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 UNC5BQ8IZJ1 945 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CMTM8Q8IZV2 173 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 BCL6BQ8N143 479 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 PGBD5Q8N414 524 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 DTX3Q8N9I9 347 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 IPMKQ8NFU5 416 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 USP13Q92995 863 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 ZNF566Q969W8 418 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 NMD3Q96D46 503 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 ATP6V1G3Q96LB4 118 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SIGLEC10Q96LC7 697 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TTC25Q96NG3 672 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 NELL2Q99435 816 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 DDX50Q9BQ39 737 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 TBL1YQ9BQ87 522 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 NUDT16L1Q9BRJ7 211 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 TACO1Q9BSH4 297 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 FICDQ9BVA6 458 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TRIM54Q9BYV2 358 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 DPH1Q9BZG8 443 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 LMAN2LQ9H0V9 348 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TASP1Q9H6P5 420 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MANSC1Q9H8J5 431 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SLC28A3Q9HAS3 691 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 XAB2Q9HCS7 855 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 SARS2Q9NP81 518 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 OBP2BQ9NPH6 170 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PRDM7Q9NQW5 492 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 EIF2B3Q9NR50 452 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 C19orf73Q9NVV2 129 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SYBUQ9NX95 663 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 VPS18Q9P253 973 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 IGSF9Q9P2J2 1179 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SLC17A6Q9P2U8 582 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CTNNAL1Q9UBT7 734 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 GPR160Q9UJ42 338 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MAGEL2Q9UJ55 1249 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 BLOC1S6Q9UL45 172 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CLEC4EQ9ULY5 219 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 ARHGAP26Q9UNA1 814 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MAD1L1Q9Y6D9 718 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TEX264Q9Y6I9 313 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 WDR87Q6ZQQ6 2873 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 ADAMTS9Q9P2N4 1935 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 RIF1Q5UIP0 2472 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 CACNA1EQ15878 2313 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 DOPEY1Q5JWR5 2465 aa4.15□□□□□ -1.74
CD44-226ENST00000527889 A0A087WUV0 522 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 LINC00854A0A1B0GVQ3 168 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ILVBLA1L0T0 632 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 TYW5A2RUC4 315 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 NEDD8-MDP1E9PL57 170 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 H0Y626 953 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 EIF3FO00303 357 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 RTCAO00442 366 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 SYT5O00445 386 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 NPC1O15118 1278 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 RGS16O15492 202 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 KDELR3O43731 214 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 PLOD3O60568 738 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ZNF189O75820 626 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 TMCC1O94876 653 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 SUN1O94901 812 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 FGF19O95750 216 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 GLP2RO95838 553 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 IL18BPO95998 194 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 C1RP00736 705 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 MMP2P08253 660 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 F7P08709 466 aaPredicted RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 FTH1P19P0C7X4 201 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 DDX6P26196 483 aaKnown RBP eCLIP4.15□□□□□ -1.75
CD44-226ENST00000527889 GCAP28676 217 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 HOXA9P31269 272 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CD70P32970 193 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CSKP41240 450 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CD86P42081 329 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 RAD52P43351 418 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 RGRP47804 291 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 RXRGP48443 463 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 GEMP55040 296 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 EIF3BP55884 814 aaKnown RBP4.15□□□□□ -1.75
CD44-226ENST00000527889 WNT3AP56704 352 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ARF5P84085 180 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 CDK16Q00536 496 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 ZNF33AQ06730 810 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 IL10RBQ08334 325 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 FOXO1Q12778 655 aa4.15□□□□□ -1.75
CD44-226ENST00000527889 HYAL1Q12794 435 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms