RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CNOT3O75175 753 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 ECI2O75521 394 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 NOL4O94818 638 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 AFPP02771 609 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 WNT1P04628 370 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 ARSAP15289 507 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 HMGA1P17096 107 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 KELP23276 732 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 CCR5P51681 352 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 RPS13P62277 151 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 ZBTB16Q05516 673 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 LRMPQ12912 555 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 CUL2Q13617 745 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 ALKBH1Q13686 389 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 CCDC183Q5T5S1 534 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 RBM43Q6ZSC3 357 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 FAM114A1Q8IWE2 563 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 C12orf29Q8N999 325 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 STKLD1Q8NE28 680 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 SLC2A14Q8TDB8 520 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 SMARCD2Q92925 531 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 CNOT6LQ96LI5 555 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 ADAD1Q96M93 576 aaKnown RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 KXD1Q9BQD3 176 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 THAP9Q9H5L6 903 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 FAM124BQ9H5Z6 455 aaPredicted RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 TASP1Q9H6P5 420 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 ZFP14Q9HCL3 533 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 CISHQ9NSE2 258 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 FAM49BQ9NUQ9 324 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 THAP1Q9NVV9 213 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 EHD2Q9NZN4 543 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 UXTQ9UBK9 157 aaPredicted RBP7.08□□□□□ -1.28
SDCBP-208ENST00000520228 KLQ9UEF7 1012 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 HMGXB4Q9UGU5 601 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 DUSP12Q9UNI6 340 aa7.08□□□□□ -1.28
SDCBP-208ENST00000520228 C5orf42Q9H799 3197 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 FAM200BP0CF97 657 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 CCDC130P13994 396 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 PKMP14618 531 aaKnown RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 FCARP24071 287 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 TBXAS1P24557 533 aaPredicted RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 MTIF2P46199 727 aaKnown RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 MVDP53602 400 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 YWHAEP62258 255 aaKnown RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 RHAGQ02094 409 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 STXBP5Q5T5C0 1151 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 DENND5BQ6ZUT9 1274 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 PAQR9Q6ZVX9 377 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 FAM57BQ71RH2 274 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM150AQ86TG1 271 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 ARID3BQ8IVW6 561 aaPredicted RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 LMO3Q8TAP4 145 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 MRPS31Q92665 395 aaKnown RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 KCNJ9Q92806 393 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 ELSPBP1Q96BH3 223 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 SMARCD1Q96GM5 515 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 KCNK16Q96T55 309 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 HNRNPABQ99729 332 aaKnown RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 INTS2Q9H0H0 1204 aaKnown RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 TRPV4Q9HBA0 871 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 DMAP1Q9NPF5 467 aaPredicted RBP7.07□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM30AQ9NV96 361 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 ANO10Q9NW15 660 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM248Q9NWD8 314 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 BTBD3Q9Y2F9 522 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 ATG2AQ2TAZ0 1938 aa7.07□□□□□ -1.28
SDCBP-208ENST00000520228 CITO14578 2027 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 HEPACAM2A8MVW5 462 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 KCNU1A8MYU2 1149 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 RTN3O95197 1032 aaPredicted RBP7.06□□□□□ -1.28
SDCBP-208ENST00000520228 YWHAQP27348 245 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 HOXD9P28356 352 aaPredicted RBP7.06□□□□□ -1.28
SDCBP-208ENST00000520228 ADORA2BP29275 332 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 AVPR1AP37288 418 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 PPP3CCP48454 512 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 RAD23BP54727 409 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 MAP3K7CLP57077 242 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 SLC12A1Q13621 1099 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 STX1AQ16623 288 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 HSP90AA4PQ58FG1 418 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 ZNF626Q68DY1 528 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 TXNDC8Q6A555 127 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 CAVIN1Q6NZI2 390 aaKnown RBP7.06□□□□□ -1.28
SDCBP-208ENST00000520228 SLC30A9Q6PML9 568 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 SLC2A7Q6PXP3 512 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 MON1AQ86VX9 555 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 CMTM8Q8IZV2 173 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 NUP93Q8N1F7 819 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 MAB21L3Q8N8X9 362 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 SLC4A11Q8NBS3 891 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 C2CD4CQ8TF44 421 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 KAT2AQ92830 837 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 USP13Q92995 863 aaPredicted RBP7.06□□□□□ -1.28
SDCBP-208ENST00000520228 SLITRK1Q96PX8 696 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 CRACR2AQ9BSW2 395 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 TRMT61BQ9BVS5 477 aaKnown RBP7.06□□□□□ -1.28
SDCBP-208ENST00000520228 SCNM1Q9BWG6 230 aa7.06□□□□□ -1.28
SDCBP-208ENST00000520228 FRMD8Q9BZ67 464 aaPredicted RBP7.06□□□□□ -1.28
SDCBP-208ENST00000520228 PLA2G2FQ9BZM2 168 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms