RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SSTR1P30872 391 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 CCKBRP32239 447 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 ZFP36L1Q07352 338 aaKnown RBP13.91□□□□□ -0.18
NUP54-216ENST00000514901 TRA2AQ13595 282 aaKnown RBP eCLIP13.91□□□□□ -0.18
NUP54-216ENST00000514901 NKAIN2Q5VXU1 208 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 TMEM71Q6P5X7 295 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 ZNF549Q6P9A3 640 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 NAPRTQ6XQN6 538 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 ZNF761Q86XN6 746 aaPredicted RBP13.91□□□□□ -0.18
NUP54-216ENST00000514901 PLXDC1Q8IUK5 500 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 ZBTB2Q8N680 514 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 ACVR1CQ8NER5 493 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 INPP5DQ92835 1189 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 C9orf72Q96LT7 481 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 FOPNLQ96NB1 174 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 TBC1D10AQ9BXI6 508 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 TRIT1Q9H3H1 467 aaKnown RBP13.91□□□□□ -0.18
NUP54-216ENST00000514901 TFB2MQ9H5Q4 396 aaKnown RBP13.91□□□□□ -0.18
NUP54-216ENST00000514901 LRRC4CQ9HCJ2 640 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 TAS2R13Q9NYV9 303 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 SLC24A2Q9UI40 661 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 ATXN7L1Q9ULK2 861 aaPredicted RBP13.91□□□□□ -0.18
NUP54-216ENST00000514901 CDYLQ9Y232 598 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 ASF1AQ9Y294 204 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 DHRS7Q9Y394 339 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 TPRP12270 2363 aaKnown RBP13.91□□□□□ -0.18
NUP54-216ENST00000514901 PRAMEF33A0A0G2JMD5 474 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 TCRBV9S1A1TA0A576 114 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 FAM149AA5PLN7 773 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 RHOXF2BP0C7M4 288 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 GABRB3P28472 473 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 STX2P32856 288 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 DEKP35659 375 aaKnown RBP13.9□□□□□ -0.18
NUP54-216ENST00000514901 MAPK9P45984 424 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 CLCN7P51798 805 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 LIMK2P53671 638 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 CSE1LP55060 971 aaKnown RBP13.9□□□□□ -0.18
NUP54-216ENST00000514901 INHBCP55103 352 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 CLDN6P56747 220 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 GPX6P59796 221 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 EIF3IQ13347 325 aaKnown RBP13.9□□□□□ -0.18
NUP54-216ENST00000514901 GBX1Q14549 363 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 PLCL1Q15111 1095 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 TTC23LQ6PF05 361 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 UNC5DQ6UXZ4 953 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 NEK10Q6ZWH5 1172 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 STRA8Q7Z7C7 330 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 EIF1ADQ8N9N8 165 aaKnown RBP13.9□□□□□ -0.18
NUP54-216ENST00000514901 PHC3Q8NDX5 983 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 OR5K2Q8NHB8 316 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 NCSTNQ92542 709 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 RHOXF2Q9BQY4 288 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 NRSN2Q9GZP1 204 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 RAB33BQ9H082 229 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 ZMYND15Q9H091 742 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 RDH14Q9HBH5 336 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 AKAP7Q9P0M2 348 aaPredicted RBP13.9□□□□□ -0.18
NUP54-216ENST00000514901 PDP2Q9P2J9 529 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 TXNDC16Q9P2K2 825 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 EPHA6Q9UF33 1036 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 VWA7Q9Y334 891 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 ENTPD2Q9Y5L3 495 aa13.9□□□□□ -0.18
NUP54-216ENST00000514901 FAM159BA6NKW6 160 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 EIF3FO00303 357 aaPredicted RBP13.89□□□□□ -0.19
NUP54-216ENST00000514901 CBSLP0DN79 551 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 ENO3P13929 434 aaPredicted RBP13.89□□□□□ -0.19
NUP54-216ENST00000514901 SPINK2P20155 84 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 PHBP35232 272 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 CBSP35520 551 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 CFHR1Q03591 330 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 ABRQ12979 859 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 NAB1Q13506 487 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 SLMAPQ14BN4 828 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 LRRC8EQ6NSJ5 796 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 DUS1LQ6P1R4 473 aaKnown RBP13.89□□□□□ -0.19
NUP54-216ENST00000514901 CAPN12Q6ZSI9 719 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 VRK3Q8IV63 474 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 SLITRK4Q8IW52 837 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 MAGEC3Q8TD91 643 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 SKA2Q8WVK7 121 aaPredicted RBP13.89□□□□□ -0.19
NUP54-216ENST00000514901 LCN9Q8WX39 176 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 ZDHHC12Q96GR4 267 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 LIN37Q96GY3 246 aaPredicted RBP13.89□□□□□ -0.19
NUP54-216ENST00000514901 GPR21Q99679 349 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 NUDT22Q9BRQ3 303 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 TRMT6Q9UJA5 497 aaKnown RBP13.89□□□□□ -0.19
NUP54-216ENST00000514901 MED16Q9Y2X0 877 aa13.89□□□□□ -0.19
NUP54-216ENST00000514901 CCDC187A0A096LP49 1063 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 IGHV5-10-1A0A0J9YXX1 117 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 MATN2O00339 956 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 HGSO14964 777 aaPredicted RBP13.88□□□□□ -0.19
NUP54-216ENST00000514901 CASC3O15234 703 aaKnown RBP13.88□□□□□ -0.19
NUP54-216ENST00000514901 TOX3O15405 576 aaPredicted RBP13.88□□□□□ -0.19
NUP54-216ENST00000514901 HOXB3P14651 431 aaPredicted RBP13.88□□□□□ -0.19
NUP54-216ENST00000514901 TYRP1P17643 537 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 ECHS1P30084 290 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 CCNFP41002 786 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 CAPZBP47756 277 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 CAMK2BQ13554 666 aa13.88□□□□□ -0.19
NUP54-216ENST00000514901 KYNUQ16719 465 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms