RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TAF1BQ53T94 588 aaPredicted RBP16.81■□□□□ 0.28
LIME1-208ENST00000493265 TMEM207Q6UWW9 146 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 PIWIL4Q7Z3Z4 852 aaKnown RBP16.81■□□□□ 0.28
LIME1-208ENST00000493265 EID2Q8N6I1 236 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 GLMNQ92990 594 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 MTBPQ96DY7 904 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 RMDN2Q96LZ7 410 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 C12orf66Q96MD2 445 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 TMEM109Q9BVC6 243 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 TMEM121BQ9BXQ6 578 aaPredicted RBP16.81■□□□□ 0.28
LIME1-208ENST00000493265 OR52A5Q9H2C5 316 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 LATS2Q9NRM7 1088 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 IMP3Q9NV31 184 aaKnown RBP16.81■□□□□ 0.28
LIME1-208ENST00000493265 SCHIP1Q9P0W5 487 aaPredicted RBP16.81■□□□□ 0.28
LIME1-208ENST00000493265 CDYLQ9Y232 598 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 CSNK1G3Q9Y6M4 447 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 ZZEF1O43149 2961 aa16.81■□□□□ 0.28
LIME1-208ENST00000493265 CACNA1EQ15878 2313 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 A0A096LPK6 155 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 PRR19A6NJB7 356 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 OR52A4PA6NMU1 304 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 IFRD1O00458 451 aaPredicted RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 RGS16O15492 202 aaPredicted RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 SLCO2B1O94956 709 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 C2P06681 752 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 SLC35E2BP0CK96 405 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 CCDC166P0CW27 439 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 F3P13726 295 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 CD9P21926 228 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 IL2P60568 153 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 IRF9Q00978 393 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 PLOD1Q02809 727 aaPredicted RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 RPA4Q13156 261 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 CLCA4Q14CN2 919 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 ZKSCAN8Q15776 578 aaPredicted RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 DUS1LQ6P1R4 473 aaKnown RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 KANSL1Q7Z3B3 1105 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 SLC22A15Q8IZD6 547 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 KDF1Q8NAX2 398 aaPredicted RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 PHC3Q8NDX5 983 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 SETD7Q8WTS6 366 aaKnown RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 ANKRD49Q8WVL7 239 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 ANKRD7Q92527 254 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 INSM2Q96T92 566 aaPredicted RBP16.8■□□□□ 0.28
LIME1-208ENST00000493265 POPDC3Q9HBV1 291 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 SYTL2Q9HCH5 934 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 PCMTD2Q9NV79 361 aa16.8■□□□□ 0.28
LIME1-208ENST00000493265 KNL1Q8NG31 2342 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 SPEGQ15772 3267 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 TRIM38O00635 465 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 RFPL1O75677 317 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 ALPPL2P10696 532 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 MYF5P13349 255 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 BRAFP15056 766 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 ZNF37AP17032 561 aaPredicted RBP16.79■□□□□ 0.28
LIME1-208ENST00000493265 CSHL1Q14406 222 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 KRT33BQ14525 404 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 SUZ12Q15022 739 aaKnown RBP16.79■□□□□ 0.28
LIME1-208ENST00000493265 RPE65Q16518 533 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 TBC1D1Q86TI0 1168 aaPredicted RBP16.79■□□□□ 0.28
LIME1-208ENST00000493265 PDZD3Q86UT5 571 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 MYO1HQ8N1T3 1032 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 SDR16C5Q8N3Y7 309 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 RIBC1Q8N443 379 aaPredicted RBP16.79■□□□□ 0.28
LIME1-208ENST00000493265 NKAPQ8N5F7 415 aaKnown RBP16.79■□□□□ 0.28
LIME1-208ENST00000493265 MZB1Q8WU39 189 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 GATA6Q92908 595 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 CXorf40BQ96DE9 158 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 DNAAF2Q9NVR5 837 aaKnown RBP16.79■□□□□ 0.28
LIME1-208ENST00000493265 EURLQ9NYK6 297 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 KLHL42Q9P2K6 505 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 LGALS13Q9UHV8 139 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 ACOT9Q9Y305 439 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 WDFY3Q8IZQ1 3526 aa16.79■□□□□ 0.28
LIME1-208ENST00000493265 A0A087X1B8 175 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 PRAMEF33A0A0G2JMD5 474 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 SPAARA0A1B0GVQ0 90 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 A6NCN8 305 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 GOLGA6L10A6NI86 522 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 HYAL3O43820 417 aaPredicted RBP16.78■□□□□ 0.28
LIME1-208ENST00000493265 PCDHGA12O60330 932 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 MPOP05164 745 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 MYZAPP0CAP1 466 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 CBSLP0DN79 551 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 PYGBP11216 843 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 CBSP35520 551 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 MAZP56270 477 aaKnown RBP16.78■□□□□ 0.28
LIME1-208ENST00000493265 BIRC2Q13490 618 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 GBX1Q14549 363 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 RASA2Q15283 850 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 AGAP9Q5VTM2 703 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 IYDQ6PHW0 289 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 LVRNQ6Q4G3 990 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 ABRAXAS1Q6UWZ7 409 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 TIFABQ6ZNK6 161 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 TRIM48Q8IWZ4 208 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 NAGSQ8N159 534 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 KYQ8NBH2 561 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 KCTD4Q8WVF5 259 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 TFGQ92734 400 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms