RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 FZD3Q9NPG1 666 aa13.91□□□□□ -0.18
CUX1-209ENST00000487284 MBNL1Q9NR56 388 aaKnown RBP13.91□□□□□ -0.18
CUX1-209ENST00000487284 UTP6Q9NYH9 597 aaKnown RBP13.91□□□□□ -0.18
CUX1-209ENST00000487284 TSR3Q9UJK0 312 aaKnown RBP13.91□□□□□ -0.18
CUX1-209ENST00000487284 PRDM4Q9UKN5 801 aa13.91□□□□□ -0.18
CUX1-209ENST00000487284 CDYLQ9Y232 598 aa13.91□□□□□ -0.18
CUX1-209ENST00000487284 TRAF6Q9Y4K3 522 aa13.91□□□□□ -0.18
CUX1-209ENST00000487284 CAPN7Q9Y6W3 813 aa13.91□□□□□ -0.18
CUX1-209ENST00000487284 ABCA7Q8IZY2 2146 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 NCF1BA6NI72 391 aaPredicted RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 NCF1CA8MVU1 366 aaPredicted RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 SDHDO14521 159 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 FFAR2O15552 330 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 S100BP04271 92 aaPredicted RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 NCF1P14598 390 aaPredicted RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 TSPAN8P19075 237 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 EPHA3P29320 983 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 GPR1P46091 355 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 FNTBP49356 437 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 PRLHRP49683 370 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 SH3BP2P78314 561 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 BTKQ06187 659 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 PCBP2Q15366 365 aaKnown RBP eCLIP13.9□□□□□ -0.18
CUX1-209ENST00000487284 PHKG1Q16816 387 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 ZNF648Q5T619 568 aaPredicted RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 RAET1GQ6H3X3 334 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 NEK10Q6ZWH5 1172 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 ACAD11Q709F0 780 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 RASGRP3Q8IV61 690 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 DTWD2Q8NBA8 298 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 TP53I13Q8NBR0 393 aaPredicted RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 AGAP11Q8TF27 550 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 DLG3Q92796 817 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 KLHL29Q96CT2 875 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 WDR55Q9H6Y2 383 aaPredicted RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 MEAF6Q9HAF1 191 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 ZBTB26Q9HCK0 441 aa13.9□□□□□ -0.18
CUX1-209ENST00000487284 TNPO3Q9Y5L0 923 aaKnown RBP13.9□□□□□ -0.18
CUX1-209ENST00000487284 GOLGA8QA0A0J9YX86 632 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 GOLGA8OA6NCC3 632 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 GOLGA8NF8WBI6 632 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 E2F3O00716 465 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 INPP4BO15327 924 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 LATO43561 262 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 GPC4O75487 556 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 PCCBP05166 539 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 IGHV4-34P06331 123 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 VCLP18206 1134 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 CALB2P22676 271 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 HOXA6P31267 233 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 RASSF2P50749 326 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 CTSCP53634 463 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 TMEM115Q12893 351 aaPredicted RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 BOP1Q14137 746 aaKnown RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 UBAP2LQ14157 1087 aaKnown RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 IRF4Q15306 451 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 LSM12Q3MHD2 195 aaKnown RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 UGT3A2Q3SY77 523 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 USP39Q53GS9 565 aaKnown RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 CDKL4Q5MAI5 379 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 KIAA0895LQ68EN5 471 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 CLYBLQ8N0X4 340 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 TRPC4APQ8TEL6 797 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 UBTD2Q8WUN7 234 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 ASZ1Q8WWH4 475 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 ELMO1Q92556 727 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 SPACA7Q96KW9 195 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 ZCCHC2Q9C0B9 1178 aaKnown RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 EBF2Q9HAK2 575 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 MID1IP1Q9NPA3 183 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 EIF2B4Q9UI10 523 aaKnown RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 PTBP2Q9UKA9 531 aaKnown RBP13.89□□□□□ -0.19
CUX1-209ENST00000487284 TRIM33Q9UPN9 1127 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 ASB1Q9Y576 335 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 USP34Q70CQ2 3546 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 KMT2EQ8IZD2 1858 aa13.89□□□□□ -0.19
CUX1-209ENST00000487284 GON4LQ3T8J9 2241 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 CCDC163A0A0D9SF12 145 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 FAM86C2PA6NEL3 165 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 OR2AG2A6NM03 316 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 PRR5-ARHGAP8B1AHC4 643 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 E9PBE3 544 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 TNFRSF10AO00220 468 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 PPP6CO00743 305 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 AZIN1O14977 448 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 KLHL41O60662 606 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 NDUFS2O75306 463 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 SKAP2O75563 359 aaPredicted RBP13.88□□□□□ -0.19
CUX1-209ENST00000487284 SLCO2B1O94956 709 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 MLYCDO95822 493 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 C8GP07360 202 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 ENO2P09104 434 aaPredicted RBP13.88□□□□□ -0.19
CUX1-209ENST00000487284 BCKDHBP21953 392 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 IGFALSP35858 605 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 ARHGAP8P85298 464 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 CDKL1Q00532 357 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 CSTF1Q05048 431 aaKnown RBP13.88□□□□□ -0.19
CUX1-209ENST00000487284 HSPA14Q0VDF9 509 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 SP140Q13342 867 aa13.88□□□□□ -0.19
CUX1-209ENST00000487284 BCL7AQ4VC05 210 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms