RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 IMPDH1P20839 514 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 BCKDHBP21953 392 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 ACADLP28330 430 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 ALDH3A1P30838 453 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 HALP42357 657 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 GNPDA1P46926 289 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 GLRBP48167 497 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 PIK3CGP48736 1102 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 RPIAP49247 311 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 C21orf59P57076 290 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 TSNQ15631 228 aaKnown RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 PPP1R3AQ16821 1122 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 UAP1L1Q3KQV9 507 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 PLK5Q496M5 336 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 LCE2DQ5TA82 110 aaPredicted RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 CAPRIN2Q6IMN6 1127 aaKnown RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 C16orf46Q6P387 395 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 CRTC3Q6UUV7 619 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 SBSNQ6UWP8 590 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 ABRAXAS1Q6UWZ7 409 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 UBE2R2Q712K3 238 aaPredicted RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 CHST15Q7LFX5 561 aaPredicted RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 TMEFF1Q8IYR6 380 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 TBC1D21Q8IYX1 336 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 RAB42Q8N4Z0 105 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 OR6Y1Q8NGX8 325 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 PPP1R14CQ8TAE6 165 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 MGARPQ8TDB4 240 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 GPBAR1Q8TDU6 330 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 UBTD2Q8WUN7 234 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 SKA2Q8WVK7 121 aaPredicted RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 OR1E3Q8WZA6 343 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 FAM136AQ96C01 138 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 GRAMD1AQ96CP6 724 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 LOXL4Q96JB6 756 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 CNDP1Q96KN2 507 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 CCDC138Q96M89 665 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 SLC6A18Q96N87 628 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 MYOCQ99972 504 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 PAIP2Q9BPZ3 127 aaKnown RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 OR52A5Q9H2C5 316 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 MVB12BQ9H7P6 319 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 CYP4F12Q9HCS2 524 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 KLC4Q9NSK0 619 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 THAP1Q9NVV9 213 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 ZNF358Q9NW07 568 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 CPSF2Q9P2I0 782 aaKnown RBP9.94□□□□□ -0.82
USP39-215ENST00000481409 GPSM3Q9Y4H4 160 aa9.94□□□□□ -0.82
USP39-215ENST00000481409 NCOR1O75376 2440 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 CACNA1IQ9P0X4 2223 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 NPEPPSL1A6NEC2 478 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 A8MT66 165 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 SUPT3HB4E1H0 165 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 CDC7O00311 574 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 FFAR2O15552 330 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 DLX3O60479 287 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 SUPT3HO75486 399 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 TOP3BO95985 862 aaKnown RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 SBK3P0C264 359 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 SP9P0CG40 484 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ACP5P13686 325 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 MTHFD2P13995 350 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 GFAPP14136 432 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 NME1P15531 152 aaKnown RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 CCND1P24385 295 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 PBLDP30039 288 aaPredicted RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 LSP1P33241 339 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 GGT5P36269 586 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 NXPH1P58417 271 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 HNRNPKP61978 463 aaKnown RBP eCLIP9.93□□□□□ -0.82
USP39-215ENST00000481409 HERVK_113P63132 956 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 GUCY1A3Q02108 690 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 DMWDQ09019 674 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 FZD2Q14332 565 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 NFE2L1Q14494 772 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ARHGAP19Q14CB8 494 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 SETDB1Q15047 1291 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 PCBP2Q15366 365 aaKnown RBP eCLIP9.93□□□□□ -0.82
USP39-215ENST00000481409 ELOCQ15369 112 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ANGPT1Q15389 498 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 OR4D1Q15615 310 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ALG11Q2TAA5 492 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ZC3H14Q6PJT7 736 aaKnown RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 TSSK4Q6SA08 328 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 C10orf107Q8IVU9 208 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 DCUN1D3Q8IWE4 304 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 RBM12BQ8IXT5 1001 aaKnown RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 SLC22A18ASQ8N1D0 253 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 FBXO39Q8N4B4 442 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 SPATA6LQ8N4H0 392 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ZNF75CPQ92670 426 aaPredicted RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 RAD51AP1Q96B01 352 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 FBXL8Q96CD0 374 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 CHMP6Q96FZ7 201 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 MAGEB10Q96LZ2 347 aaPredicted RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 RAB11FIP5Q9BXF6 653 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ERVK-6Q9BXR3 956 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 ZDHHC5Q9C0B5 715 aa9.93□□□□□ -0.82
USP39-215ENST00000481409 NSRP1Q9H0G5 558 aaKnown RBP9.93□□□□□ -0.82
USP39-215ENST00000481409 EML4Q9HC35 981 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 472.8 ms